releasing 1.1.0

[keighrim]

Overview

This is a minor-level release that fixes various bugs and adds safeguards for possible inconsistency in output MMIFs.

Additions

• sign_view now use user input parameters "as-is" whenever they are available (sign_view now uses "raw" input parameters, if available. #181)
• apps will conduct JSON validation right before it responses with MMIF output (validate mmif output before return in `annotate() method #179)
• clams rewind is now available to rewind MMIF files (MMIF rewinder #190)

$ clams rewind --help
usage: clams rewind [-h] [-o PATH] [-p] [-n NUMBER] [-m {app,view}] mmif_file

provides CLI to rewind a MMIF from a CLAMS pipeline.

MMIF rewinder rewinds a MMIF by deleting the last N views.
N can be specified as a number of views, or a number of producer apps.

positional arguments:
  mmif_file             Path to the input MMIF file, or '-' to read from stdin.

optional arguments:
  -h, --help            show this help message and exit
  -o PATH, --output PATH
                        Path to the rewound MMIF output file. When not given, the rewound MMIF is printed to stdout.
  -p, --pretty          Pretty-print rewound MMIF. True by default
  -n NUMBER, --number NUMBER
                        Number of views to rewind (default: interactive mode)
  -m {app,view}, --mode {app,view}
                        Number of views to rewind (default: interactive mode)

Changes

• pre-built base container images will take less space (no pip cache in container images to reduce image sizes #186)
• apps running in production mode (over gunicorn) now logs to stdout (Log to stdout #183)
• fixed a bug in app metadata generation (automatic version string generation not working #187)

[codecov]

Codecov Report

Attention: 46 lines in your changes are missing coverage. Please review.

Comparison is base (b45e267) 76.77% compared to head (45ae3b8) 73.69%.
Report is 15 commits behind head on main.

Files	Patch %	Lines
clams/mmif_utils/rewind.py	48.10%	41 Missing ⚠️
clams/__init__.py	60.00%	2 Missing ⚠️
clams/app/__init__.py	90.90%	2 Missing ⚠️
clams/appmetadata/__init__.py	0.00%	1 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #192      +/-   ##
==========================================
- Coverage   76.77%   73.69%   -3.08%     
==========================================
  Files           7        9       +2     
  Lines         633      730      +97     
==========================================
+ Hits          486      538      +52     
- Misses        147      192      +45     

Flag	Coverage Δ
unittests	73.69% <59.64%> (-3.08%)	⬇️

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