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Tools for working with correspondences between biological entities, especially sequences and 3D structures

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consensus_interactions
consensus_interactions
 
 
.gitignore
.gitignore
 
 
1S72_3U5H_correspondences_511bdc0d6c9b3.csv
1S72_3U5H_correspondences_511bdc0d6c9b3.csv
 
 
1S72_4A1B_correspondences_511c06e489650.csv
1S72_4A1B_correspondences_511c06e489650.csv
 
 
2AW7_2XZM_correspondences_50dcf947cea37.csv
2AW7_2XZM_correspondences_50dcf947cea37.csv
 
 
2AW7_GG16S2012_correspondences.txt
2AW7_GG16S2012_correspondences.txt
 
 
2QBD_2AW7_correspondences_5147462ca4e64.csv
2QBD_2AW7_correspondences_5147462ca4e64.csv
 
 
2QBD_2AW7_correspondences_5147462ca4e64.txt
2QBD_2AW7_correspondences_5147462ca4e64.txt
 
 
2QBD_3I8H_correspondences.txt
2QBD_3I8H_correspondences.txt
 
 
2QBD_3I8H_correspondences_514313b142ec5.csv
2QBD_3I8H_correspondences_514313b142ec5.csv
 
 
2QBD_3I8H_correspondences_514313b142ec5.txt
2QBD_3I8H_correspondences_514313b142ec5.txt
 
 
2QBD_GG16S2012_correspondences.txt
2QBD_GG16S2012_correspondences.txt
 
 
2QBG.csv
2QBG.csv
 
 
2QBG_1S72_correspondences.csv
2QBG_1S72_correspondences.csv
 
 
2QBG_23S_Bacterial_Stombaugh_et_al_Sup_Mat_S3_correspondences.txt
2QBG_23S_Bacterial_Stombaugh_et_al_Sup_Mat_S3_correspondences.txt
 
 
2QBG_3U5H_correspondences_511bdafa59aa6.csv
2QBG_3U5H_correspondences_511bdafa59aa6.csv
 
 
2QBG_3U5H_correspondences_511bdafa59aa6.txt
2QBG_3U5H_correspondences_511bdafa59aa6.txt
 
 
2QBG_3V2F_correspondences_50dd09ef4f614.csv
2QBG_3V2F_correspondences_50dd09ef4f614.csv
 
 
2QBG_3V2F_correspondences_50dd09ef4f614.txt
2QBG_3V2F_correspondences_50dd09ef4f614.txt
 
 
2QBG_Silva_LSU_Bacteria_2013-03-20_correspondences.txt
2QBG_Silva_LSU_Bacteria_2013-03-20_correspondences.txt
 
 
3I8H_GG16S2012_correspondences.txt
3I8H_GG16S2012_correspondences.txt
 
 
3V2F_3U5H_correspondences_511bdbc4dc920.csv
3V2F_3U5H_correspondences_511bdbc4dc920.csv
 
 
3V2F_3U5H_correspondences_511bdbc4dc920.txt
3V2F_3U5H_correspondences_511bdbc4dc920.txt
 
 
AlignmentPrograms.py
AlignmentPrograms.py
 
 
CombineCorrespondences.py
CombineCorrespondences.py
 
 
CombineCorrespondences_yingju.py
CombineCorrespondences_yingju.py
 
 
CompareCorrespondences.py
CompareCorrespondences.py
 
 
CompareCorrespondences_yingju.py
CompareCorrespondences_yingju.py
 
 
ExtractColumnsForMotifBasepairs.py
ExtractColumnsForMotifBasepairs.py
 
 
ExtractColumnsForMotifs.py
ExtractColumnsForMotifs.py
 
 
FindBestAlignmentRow.py
FindBestAlignmentRow.py
 
 
GG16S2012.fasta
GG16S2012.fasta
 
 
GetTopLinesFromFile.py
GetTopLinesFromFile.py
 
 
IL_93568.1 IL_1FJG_026 GG16S2012.fasta
IL_93568.1 IL_1FJG_026 GG16S2012.fasta
 
 
MakeFASTAFilesForMotifs.py
MakeFASTAFilesForMotifs.py
 
 
MatchSequenceToAlignment.py
MatchSequenceToAlignment.py
 
 
R3DAlignToCorrespondences.py
R3DAlignToCorrespondences.py
 
 
R3DAlignToID.py
R3DAlignToID.py
 
 
README.md
README.md
 
 
ReadCorrespondences.py
ReadCorrespondences.py
 
 
ReadFASTAAlignment.py
ReadFASTAAlignment.py
 
 
RemoveGaps.py
RemoveGaps.py
 
 
RemoveGapsLA.py
RemoveGapsLA.py
 
 
RetrieveColumnsFromAlignment.py
RetrieveColumnsFromAlignment.py
 
 
SSU_GG_MSA_escherichia_coli.fasta
SSU_GG_MSA_escherichia_coli.fasta
 
 
StructureToSequenceAlignment.py
StructureToSequenceAlignment.py
 
 
TestAlignmentPrograms.py
TestAlignmentPrograms.py
 
 
TestCombineCorrespondences.py
TestCombineCorrespondences.py
 
 
TestCompareCorrespondences.py
TestCompareCorrespondences.py
 
 
TestFindBestAlignmentRow.py
TestFindBestAlignmentRow.py
 
 
TestMakeFASTAFilesForMotifs.py
TestMakeFASTAFilesForMotifs.py
 
 
TestReadCorrespondences.py
TestReadCorrespondences.py
 
 
TestReadFASTAAlignment.py
TestReadFASTAAlignment.py
 
 
TestRemoveGaps.py
TestRemoveGaps.py
 
 
TestRemoveGapsLA.py
TestRemoveGapsLA.py
 
 
TestRetrieveColumnsFromAlignment.py
TestRetrieveColumnsFromAlignment.py
 
 
TestStructureToSequenceAlignment.py
TestStructureToSequenceAlignment.py
 
 
TestThreeWayAlignment.py
TestThreeWayAlignment.py
 
 
TestTransposeFASTAAlignment.py
TestTransposeFASTAAlignment.py
 
 
TestWriteCorrespondences.py
TestWriteCorrespondences.py
 
 
ThreeWayAlignment.py
ThreeWayAlignment.py
 
 
TransposeFASTAAlignment.py
TransposeFASTAAlignment.py
 
 
TransposeFASTAAlignment_yingju.py
TransposeFASTAAlignment_yingju.py
 
 
UseRetrieveColumnsFromAlignment.py
UseRetrieveColumnsFromAlignment.py
 
 
WriteCorrespondences.py
WriteCorrespondences.py
 
 
WriteCorrespondences_yingju.py
WriteCorrespondences_yingju.py
 
 
broken_lines.fasta
broken_lines.fasta
 
 
hemoglobin_alpha.fasta
hemoglobin_alpha.fasta
 
 
hemoglobin_alpha.txt
hemoglobin_alpha.txt
 
 
test.py
test.py
 
 

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correspondences

Tools for working with correspondences between biological entities, especially sequences and 3D structures

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Tools for working with correspondences between biological entities, especially sequences and 3D structures

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