Remove rdkit, sort dependencies #18
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| name: build | |
| on: | |
| push: | |
| branches: [ main ] | |
| # Run when container or environment is changed | |
| paths: | |
| - containers/dockerfile_cpu | |
| - environment.yml | |
| # Allows workflow to be manually triggered | |
| workflow_dispatch: | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| env: | |
| REGISTRY: ghcr.io | |
| IMAGE_NAME: cmelab/grits | |
| DOCKERFILE: containers/dockerfile_cpu | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: read | |
| packages: write | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@main | |
| with: | |
| fetch-depth: 0 | |
| - name: Get Latest Version | |
| id: latest-version | |
| run: | | |
| LATEST_TAG=$(git describe --tags $(git rev-list --tags --max-count=1)) | |
| echo $LATEST_TAG | |
| echo "LATEST_TAG=$LATEST_TAG" >> $GITHUB_OUTPUT | |
| # slice off the v, ie v0.7.2 -> 0.7.2 | |
| VERSION=${LATEST_TAG:1} | |
| echo $VERSION | |
| echo "VERSION=$VERSION" >> $GITHUB_OUTPUT | |
| - name: Print Latest Version | |
| run: echo ${{ steps.latest-version.outputs.VERSION }} | |
| - name: Create fully qualified image registry path | |
| id: fqirp | |
| run: | | |
| FQIRP=${{ env.REGISTRY }}/${{ env.IMAGE_NAME }}:${{ steps.latest-version.outputs.VERSION }} | |
| echo "FQIRP=$FQIRP" >> $GITHUB_OUTPUT | |
| - name: Print FQIRP | |
| run: echo ${{ steps.fqirp.outputs.FQIRP }} | |
| - name: Login to GitHub Container Registry | |
| uses: docker/login-action@v1 | |
| with: | |
| registry: ${{ env.REGISTRY }} | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Extract metadata (tags, labels) for Docker | |
| id: meta | |
| uses: docker/metadata-action@98669ae865ea3cffbcbaa878cf57c20bbf1c6c38 | |
| with: | |
| images: ${{ env.REGISTRY }}/${{ env.IMAGE_NAME }} | |
| tags: | | |
| type=ref,event=tag,enable=true,priority=600 | |
| type=semver,pattern={{major}}.{{minor}} | |
| type=semver,pattern={{version}} | |
| type=sha | |
| ${{ steps.latest-version.outputs.VERSION }} | |
| - name: Build Docker Image | |
| uses: docker/build-push-action@v4 | |
| with: | |
| context: . | |
| file: ${{ env.DOCKERFILE }} | |
| load: true | |
| push: false | |
| tags: ${{ steps.meta.outputs.tags }} | |
| labels: ${{ steps.meta.outputs.labels }} | |
| build-args: | | |
| VERSION=${{ steps.latest-version.outputs.VERSION }} | |
| - name: Test image | |
| run: | | |
| docker run --rm ${{ steps.fqirp.outputs.FQIRP }} python -c "import grits; print(grits.__version__)" | |
| - name: Push Docker image | |
| uses: docker/build-push-action@ad44023a93711e3deb337508980b4b5e9bcdc5dc | |
| with: | |
| context: . | |
| file: ${{ env.DOCKERFILE }} | |
| push: true | |
| tags: ${{ steps.meta.outputs.tags }} | |
| labels: ${{ steps.meta.outputs.labels }} | |
| build-args: | | |
| VERSION=${{ steps.latest-version.outputs.VERSION }} |