Merge pull request #13 from cni/wildcard

Expand wildcard usage to capture "non-standard" pfile naming schemes

manifest.json

@@ -1,6 +1,6 @@
 {
   "name": "pfile-mr-classifier",
-  "label": "CNI: GE P-File Metadata Import and Classification",
+  "label": "Metadata Import and Classification for GE P-Files",
   "description": "Extracts GE P-File header and generates JSON metadata (.metadata.json) which is saved in Flywheel on the P-File's info object. This gear also attempts to determine the P-File's classification (measurement, intent, etc.).",
   "maintainer": "Michael Perry <[email protected]>",
   "author": "Michael Perry <[email protected]>",
@@ -9,10 +9,10 @@
   "cite": "pfile-tools: GE P-File Utilities (https://github.com/njvack/pfile-tools)",
   "license": "BSD-2-Clause",
   "flywheel": "0",
-  "version": "2.3.1",
+  "version": "2.3.2",
   "custom": {
     "gear-builder": {
-      "image": "stanfordcni/pfile-mr-classifier:2.3.1",
+      "image": "stanfordcni/pfile-mr-classifier:2.3.2",
       "category": "converter"
     },
     "flywheel": {

run

@@ -63,7 +63,7 @@ if [[ -f $input_file ]]; then
   header_file=/tmp/pfile_header
   if echo "$input_file" | grep -q ".7.zip"; then
     echo -e "${CONTAINER}  Found pfile zip archive - unzipping, extracting, and generating truncated header..."
-    unzip -p "$input_file" "*/P*.7.gz" | head -c 1000000 | gunzip > $header_file 2>/dev/null
+    unzip -p "$input_file" "*/*.7.gz" | head -c 1000000 | gunzip > $header_file 2>/dev/null
   elif echo "$input_file" | grep -q ".7.gz"; then
     echo -e "${CONTAINER}  Found gzipped pfile - extracting and generating truncated header..."
     cat $input_file | head -c 1000000 | gunzip > $header_file 2>/dev/null