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codecreatede/README.md

Brief Introduction:

  • Open/Accept position on Scientist|Academics Researcher|Specialist |System Administrator.
  • Curriculum Vitae/Past Employers References | Scopus | ORCID | Web of Science.
  • Extremely collaborative, Highly Communicative, approachable, motivated, task and solution oriented, time responsive, and initiative taker.
  • I dont use AI for code writing and write at Linux community. This will help you understand real person.
  • If you havent heard from / confirmed with me and believed anything false, it has nothing to do with me. If someone has said i like anyone/mylikes/mydislikes/association with anything, kindly ignore such people or go to them and dont approach me. They are wasting your time and that has nothing to do with me. I dont allow someone to make a decision for me. Dont waste my and others time.

Work Areas/Employment:Bioinformatics|Deep Learning|System Administration.

  • 2024- : Universitat Potsdam,Germany, where I self-learnt Julia, GO and Javascript, Geospatial Application Development. I benchmarked PacBioHifi genome analysis with complete web-based real time analysis invoking javascript/HTML-CSS, and coded several packages, gems in Python, Ruby, Julia, GO.
  • 2021-2023: Machine and Deep learning, Devops and self-learnt Python, Web and Application development.
  • 2020-2021: Finnish Museum of Natural History and the University of Helsinki, Finland. I managed the sequencing used the NextSeq methods, including sequencing library methods. I completed genome assembly, annotations, markers genes, ITS, and phylogenomics of over 500 different species.
  • 2017-2021: Finnish Museum of Natural History and University of Helsinki, Finland, where I conducted bioinformatics and sequencing the genomes of lower plants Coleochaete orbicularis, Blasia pusilla, Chaetospiridium orbicularis, Polytrichum commune, Mallomonas, and Cryptomonas species, for which I did pacbio sequencing, assembly, annotations, organelle genomes and evolutionary/phylogenomic/comparative genomics approaches. Additionally, during that tenure, I worked for collaborations with the host organization such as Edinburgh UK, to analyse the genomics data for PAFTOL species and the chloroplast genomes of the Ambrosia clade from Norway.
  • 2016-2017: University of Connecticut, USA, where I analyzed the Douglas fir genome from the genome annotation to the phylogenomics and identifying genes and evolution of importance.
  • 2014–2016: University of Technology, Sydney, Australia, where I developed computational methods for seagrasses.
  • 2011-2014: Fondazione Edmund Mach, Italy, where I developed and analyzed bioinformatics methods for transcriptional and post-transcriptional genomics across nuclear and organelle genomes. I analyzed multiple metagenomics anlaysis coming from the fungal and bacterial species involving ITS metagenomics, as well as the bacterial genome metagenomics.

Developer Stack/Packages/Application:

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  1. genomeassembly-pacbiohifi genomeassembly-pacbiohifi Public

    PacbioHifi genome assembly benchmarks

    HTML

  2. go-pacbiohifi go-pacbiohifi Public

    profiling pacbiokmers and filtering pacbio kmers

    Go

  3. python-datastructure python-datastructure Public

    my approach of solving the leetcode, interviewcode and other questions

    Python

  4. sqlite3-genome sqlite3-genome Public

    python implementation of sqlite3 for genome assembly

    Python

  5. tairaccession tairaccession Public

    python package for arabidopsis genome analysis

    Python

  6. alignmentGo alignmentGo Public

    a cloud native application for large scale phylogenomics

    Go