Merge pull request #54 from compgenomicslab/main

update way to load from ete4
compgenomicslab · Mar 4, 2024 · 4afd039 · 4afd039
2 parents bf0a71f + 0cff533
commit 4afd039
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Showing 3 changed files with 3 additions and 3 deletions.
diff --git a/treeprofiler/layouts/seq_layouts.py b/treeprofiler/layouts/seq_layouts.py
@@ -1,5 +1,5 @@
 
-from ete4.core.seqgroup import SeqGroup
+from ete4 import SeqGroup
 from ete4.smartview import TreeLayout
 from ete4.smartview import AlignmentFace, SeqMotifFace, ScaleFace
 from ete4.smartview.renderer import draw_helpers

diff --git a/treeprofiler/src/utils.py b/treeprofiler/src/utils.py
@@ -1,7 +1,7 @@
 from __future__ import annotations
 from treeprofiler.src import b64pickle
 from ete4.parser.newick import NewickError
-from ete4.core.operations import remove
+from ete4.operations import remove
 from ete4 import Tree, PhyloTree
 from Bio import AlignIO
 from Bio.Align import MultipleSeqAlignment

diff --git a/treeprofiler/tree_annotate.py b/treeprofiler/tree_annotate.py
@@ -13,7 +13,7 @@
 from scipy import stats
 
 from ete4.parser.newick import NewickError
-from ete4.core.seqgroup import SeqGroup
+from ete4 import SeqGroup
 from ete4 import Tree, PhyloTree
 from ete4 import GTDBTaxa
 from ete4 import NCBITaxa