update dependencies

compgenomicslab · Oct 15, 2024 · 6ec5225 · 6ec5225
1 parent cd0cdac
commit 6ec5225
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Showing 3 changed files with 3 additions and 7 deletions.
diff --git a/README.md b/README.md
@@ -108,10 +108,6 @@ TreeProfiler requires
 # Install ETE Toolkit v4
 pip install --force-reinstall https://github.com/etetoolkit/ete/archive/ete4.zip
 
-
-# Install TreeProfiler dependencies
-pip install biopython selenium scipy matplotlib pymc aesara
-
 # Install custom pastml package for ete4
 pip install "git+https://github.com/dengzq1234/pastml.git@pastml2ete4" 
 
@@ -194,7 +190,7 @@ Install dependencies
 # install BioPython, selenium, scipy via conda
 conda install -c conda-forge biopython selenium scipy matplotlib pymc aesara
 # or pip
-pip install biopython selenium scipy matplotlib pymc aesara
+pip install biopython selenium scipy matplotlib pymc aesara webdriver_manager pyvirtualdisplay
 ```
 
 Install TreeProfiler

diff --git a/setup.py b/setup.py
@@ -11,7 +11,7 @@ def get_files(directory):
             file_list.append(file_path)
     return file_list
 
-VERSION = '1.2.3'
+VERSION = '1.2.4'
 install_requires = ['ete4', 'selenium', 'biopython','scipy']
 example_files = get_files('examples/')
 test_files = get_files('tests/')

diff --git a/treeprofiler/treeprofiler.py b/treeprofiler/treeprofiler.py
@@ -10,7 +10,7 @@
 __author__ = 'DENG Ziqi'
 __license__ = "GPL v3"
 __email__ = '[email protected]'
-__version__ = '1.1.0'
+__version__ = '1.2.4'
 __date__ = '14-07-2023'
 __description__ = ('A program for profiling metadata on target '
                     'tree and conduct summary analysis')