changed environment to base after installing micro_sam #95
Workflow file for this run
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| name: build_installers | |
| on: | |
| push: | |
| tags: | |
| - '**' | |
| jobs: | |
| build_intaller: | |
| name: ${{ matrix.os }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [windows-latest, ubuntu-latest] # macos-latest | |
| env: | |
| PREPARE_SCRIPT: | | |
| cd deployment | |
| conda install -y -c conda-forge constructor | |
| conda install -y -c conda-forge ruamel.yaml | |
| conda install -y -c conda-forge mamba | |
| mamba env create --file=env.yaml | |
| conda activate __MICROSAM_BUILD_ENV__ | |
| cd ../ | |
| pip install . --no-deps -v | |
| cd deployment | |
| conda activate base | |
| RUN_SCRIPT: | | |
| python version_getter.py | |
| mkdir ./${{ matrix.os }}_x86_64 | |
| constructor --output-dir ./${{ matrix.os }}_x86_64 . | |
| steps: | |
| - name: checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ github.ref }} | |
| - name: setup conda | |
| if: matrix.os == 'windows-latest' || matrix.os == 'ubuntu-latest' | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniconda-version: "latest" | |
| auto-activate-base: true | |
| activate-environment: "" | |
| env: | |
| ACTIONS_ALLOW_UNSECURE_COMMANDS: true | |
| - name: build ${{ matrix.os }}_x86_64 | |
| if: matrix.os == 'windows-latest' | |
| shell: pwsh | |
| run: | | |
| ${{ env.PREPARE_SCRIPT }} | |
| conda activate __MICROSAM_BUILD_ENV__ | |
| conda install -c anaconda menuinst | |
| python windows_menu_setup.py | |
| conda activate base | |
| ${{ env.RUN_SCRIPT }} | |
| - name: build ${{ matrix.os }}_x86_64 | |
| if: matrix.os == 'ubuntu-latest' | |
| shell: bash -el {0} | |
| run: | | |
| ${{ env.PREPARE_SCRIPT }} | |
| ${{ env.RUN_SCRIPT }} | |
| - name: build ${{ matrix.os }}_x86_64_step1 | |
| if: matrix.os == 'macos-latest' | |
| shell: bash -el {0} | |
| run: | | |
| brew install micromamba | |
| /usr/local/opt/micromamba/bin/micromamba shell init -s bash -p ~/micromamba | |
| - name: build ${{ matrix.os }}_x86_64_step2 | |
| if: matrix.os == 'macos-latest' | |
| shell: bash -el {0} | |
| run: | | |
| cd deployment | |
| micromamba activate base | |
| micromamba install -y -c conda-forge python=3.10 | |
| micromamba install -y -c conda-forge constructor | |
| micromamba install -y -c conda-forge ruamel.yaml | |
| micromamba install -y -c conda-forge mamba | |
| mamba env create --file=env.yaml | |
| python version_getter.py | |
| mkdir ./${{ matrix.os }}_x86_64 | |
| constructor --conda-exe=$(which mamba) --output-dir ./${{ matrix.os }}_x86_64 . | |
| - name: upload installer | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: ${{ matrix.os }}_x86_64 | |
| path: ./deployment/${{ matrix.os }}_x86_64 | |
| retention-days: 5 |