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Update Readme and DOC
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constantinpape committed Oct 5, 2023
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6 changes: 6 additions & 0 deletions README.md
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## Release Overview

**New in version 0.3.0**

- Support for ellipse and polygon prompts
- Support for automatic segmentation in 3d
- Training refactoring and speed-up of fine-tuning

**New in version 0.2.1 and 0.2.2**

- Several bugfixes for the newly introduced functionality in 0.2.0.
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5 changes: 5 additions & 0 deletions doc/annotation_tools.md
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Expand Up @@ -29,6 +29,11 @@ In the GUI you can select with of the four annotation tools you want to use:

And after selecting them a new window will open where you can select the input file path and other optional parameter. Then click the top button to start the tool. **Note: If you are not starting the annotation tool with a path to pre-computed embeddings then it can take several minutes to open napari after pressing the button because the embeddings are being computed.**

**Changes in version 0.3:**

We have made two changes in version 0.3 that are not reflected in the documentation below yet:
- We now support prompts from box, ellipse and polygon annotations. To reflect this we have renamed the `box_prompts` layer to `prompts` and the `prompts` layer to `point_prompts`.
- We support automatic segmentation in 3d! To use it, you can first run automated segmentation in the current slice via `Automatic Segmentation`, and then extend the segmentation of these objects to 3d by running `Segment All Slices` with `layer: auto segmentation`.

## Annotator 2D

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