biopandas v0.2.5

.azure-pipelines/azure-pipelines-linux.yml

@@ -6,28 +6,26 @@ jobs:
 - job: linux
   pool:
     vmImage: ubuntu-16.04
-  timeoutInMinutes: 240
+  timeoutInMinutes: 360
   strategy:
     maxParallel: 8
     matrix:
       linux_:
         CONFIG: linux_
-        UPLOAD_PACKAGES: False
+        UPLOAD_PACKAGES: True
+        DOCKER_IMAGE: condaforge/linux-anvil-comp7
   steps:
-  - script: |
-      sudo pip install --upgrade pip
-      sudo pip install setuptools shyaml
-    displayName: Install dependencies
-
-  # configure qemu binfmt-misc running.  This allows us to run docker containers 
+  # configure qemu binfmt-misc running.  This allows us to run docker containers
   # embedded qemu-static
   - script: |
-      docker run --rm --privileged multiarch/qemu-user-static:register
+      docker run --rm --privileged multiarch/qemu-user-static:register --reset --credential yes
       ls /proc/sys/fs/binfmt_misc/
     condition: not(startsWith(variables['CONFIG'], 'linux_64'))
     displayName: Configure binfmt_misc
 
-  - script: .azure-pipelines/run_docker_build.sh
+  - script: |
+        export CI=azure
+        .azure-pipelines/run_docker_build.sh
     displayName: Run docker build
     env:
       BINSTAR_TOKEN: $(BINSTAR_TOKEN)

.azure-pipelines/build_steps.sh

@@ -7,15 +7,15 @@
 
 set -xeuo pipefail
 export PYTHONUNBUFFERED=1
-export FEEDSTOCK_ROOT=/home/conda/feedstock_root
-export RECIPE_ROOT=/home/conda/recipe_root
-export CI_SUPPORT=/home/conda/feedstock_root/.ci_support
+export FEEDSTOCK_ROOT="${FEEDSTOCK_ROOT:-/home/conda/feedstock_root}"
+export RECIPE_ROOT="${RECIPE_ROOT:-/home/conda/recipe_root}"
+export CI_SUPPORT="${FEEDSTOCK_ROOT}/.ci_support"
 export CONFIG_FILE="${CI_SUPPORT}/${CONFIG}.yaml"
 
 cat >~/.condarc <<CONDARC
 
 conda-build:
- root-dir: /home/conda/feedstock_root/build_artifacts
+ root-dir: ${FEEDSTOCK_ROOT}/build_artifacts
 
 CONDARC
 
@@ -24,7 +24,8 @@ conda install --yes --quiet conda-forge-ci-setup=2 conda-build -c conda-forge
 # set up the condarc
 setup_conda_rc "${FEEDSTOCK_ROOT}" "${RECIPE_ROOT}" "${CONFIG_FILE}"
 
-run_conda_forge_build_setup
+source run_conda_forge_build_setup
+
 # make the build number clobber
 make_build_number "${FEEDSTOCK_ROOT}" "${RECIPE_ROOT}" "${CONFIG_FILE}"
 
@@ -35,4 +36,4 @@ if [[ "${UPLOAD_PACKAGES}" != "False" ]]; then
     upload_package "${FEEDSTOCK_ROOT}" "${RECIPE_ROOT}" "${CONFIG_FILE}"
 fi
 
-touch "/home/conda/feedstock_root/build_artifacts/conda-forge-build-done-${CONFIG}"
+touch "${FEEDSTOCK_ROOT}/build_artifacts/conda-forge-build-done-${CONFIG}"

.azure-pipelines/run_docker_build.sh

@@ -5,7 +5,7 @@
 # changes to this script, consider a proposal to conda-smithy so that other feedstocks can also
 # benefit from the improvement.
 
-set -xeuo pipefail
+set -xeo pipefail
 
 THISDIR="$( cd "$( dirname "$0" )" >/dev/null && pwd )"
 PROVIDER_DIR="$(basename $THISDIR)"
@@ -28,18 +28,33 @@ fi
 ARTIFACTS="$FEEDSTOCK_ROOT/build_artifacts"
 
 if [ -z "$CONFIG" ]; then
-    echo "Need to set CONFIG env variable"
+    set +x
+    FILES=`ls .ci_support/linux_*`
+    CONFIGS=""
+    for file in $FILES; do
+        CONFIGS="${CONFIGS}'${file:12:-5}' or ";
+    done
+    echo "Need to set CONFIG env variable. Value can be one of ${CONFIGS:0:-4}"
     exit 1
 fi
 
-pip install shyaml
-DOCKER_IMAGE=$(cat "${FEEDSTOCK_ROOT}/.ci_support/${CONFIG}.yaml" | shyaml get-value docker_image.0 condaforge/linux-anvil-comp7 )
+if [ -z "${DOCKER_IMAGE}" ]; then
+    SHYAML_INSTALLED="$(shyaml --version || echo NO)"
+    if [ "${SHYAML_INSTALLED}" == "NO" ]; then
+        echo "WARNING: DOCKER_IMAGE variable not set and shyaml not installed. Falling back to condaforge/linux-anvil-comp7"
+        DOCKER_IMAGE="condaforge/linux-anvil-comp7"
+    else
+        DOCKER_IMAGE="$(cat "${FEEDSTOCK_ROOT}/.ci_support/${CONFIG}.yaml" | shyaml get-value docker_image.0 condaforge/linux-anvil-comp7 )"
+    fi
+fi
 
 mkdir -p "$ARTIFACTS"
 DONE_CANARY="$ARTIFACTS/conda-forge-build-done-${CONFIG}"
 rm -f "$DONE_CANARY"
-# Not all providers run with a real tty.  Disable using one
-DOCKER_RUN_ARGS=" "
+
+if [ -z "${CI}" ]; then
+    DOCKER_RUN_ARGS="-it "
+fi
 
 export UPLOAD_PACKAGES="${UPLOAD_PACKAGES:-True}"
 docker run ${DOCKER_RUN_ARGS} \
@@ -49,6 +64,7 @@ docker run ${DOCKER_RUN_ARGS} \
            -e BINSTAR_TOKEN \
            -e HOST_USER_ID \
            -e UPLOAD_PACKAGES \
+           -e CI \
            $DOCKER_IMAGE \
            bash \
            /home/conda/feedstock_root/${PROVIDER_DIR}/build_steps.sh

.ci_support/linux_.yaml

@@ -1,5 +1,3 @@
-build_number_decrement:
-- '0'
 channel_sources:
 - conda-forge,defaults
 channel_targets:

.circleci/config.yml

@@ -5,26 +5,20 @@
 version: 2
 
 jobs:
-  build_linux_:
+  build:
     working_directory: ~/test
     machine: true
-    environment:
-      - CONFIG: "linux_"
     steps:
-      - checkout
       - run:
-          name: Fast finish outdated PRs and merge PRs
-          command: |
-            ./.circleci/fast_finish_ci_pr_build.sh
-            ./.circleci/checkout_merge_commit.sh
-      - run:
-          command: docker pull condaforge/linux-anvil-comp7
-      - run:
-          # Run, test and (if we have a BINSTAR_TOKEN) upload the distributions.
-          command: ./.circleci/run_docker_build.sh
+          # The Circle-CI build should not be active, but if this is not true for some reason, do a fast finish.
+          command: exit 0
 
 workflows:
   version: 2
   build_and_test:
     jobs:
-      - build_linux_
+      - build:
+          filters:
+            branches:
+              ignore:
+                - /.*/

.github/CODEOWNERS

@@ -0,0 +1,2 @@
+* @rasbt
+* @souravsingh

.github/PULL_REQUEST_TEMPLATE.md

@@ -6,7 +6,7 @@ Checklist
 * [ ] Used a fork of the feedstock to propose changes
 * [ ] Bumped the build number (if the version is unchanged)
 * [ ] Reset the build number to `0` (if the version changed)
-* [ ] [Re-rendered]( https://conda-forge.org/docs/conda_smithy.html#how-to-re-render ) with the latest `conda-smithy` (Use the phrase <code>@<space/>conda-forge-admin, please rerender</code> in a comment in this PR for automated rerendering)
+* [ ] [Re-rendered]( https://conda-forge.org/docs/maintainer/updating_pkgs.html#rerendering-feedstocks ) with the latest `conda-smithy` (Use the phrase <code>@<space/>conda-forge-admin, please rerender</code> in a comment in this PR for automated rerendering)
 * [ ] Ensured the license file is being packaged.
 
 <!--

LICENSE.txt

@@ -1,5 +1,5 @@
 BSD 3-clause license
-Copyright (c) 2015-2018, conda-forge
+Copyright (c) 2015-2019, conda-forge
 All rights reserved.
 
 Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:

README.md

@@ -1,7 +1,3 @@
-<!--
-# -*- mode: jinja -*-
--->
-
 About biopandas
 ===============
 
@@ -20,8 +16,15 @@ written in Python 2.7 and Python 3.6.
 Current build status
 ====================
 
-All platforms:
-[![noarch](https://img.shields.io/circleci/project/github/conda-forge/biopandas-feedstock/master.svg?label=noarch)](https://circleci.com/gh/conda-forge/biopandas-feedstock)
+
+<table><tr><td>All platforms:</td>
+    <td>
+      <a href="https://dev.azure.com/conda-forge/feedstock-builds/_build/latest?definitionId=3696&branchName=master">
+        <img src="https://dev.azure.com/conda-forge/feedstock-builds/_apis/build/status/biopandas-feedstock?branchName=master">
+      </a>
+    </td>
+  </tr>
+</table>
 
 Current release info
 ====================