Update make.jl #70
Annotations
10 warnings and 1 notice
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Run julia-actions/julia-docdeploy@v1:
../../../.julia/packages/Documenter/2OZOh/src/utilities/utilities.jl#L46
failed to run `@setup` block in src/examples.md
```@setup tubesection
using Karnak, Graphs, NetworkLayout, Colors
using DataFrames, CSV, DelimitedFiles
# positions are in LatLong
tubedata = CSV.File("../../examples/tubedata-modified.csv") |> DataFrame
amatrix = Matrix(tubedata[:, 4:270])
g = Graph(amatrix)
extrema_lat = extrema(tubedata.Latitude)
extrema_long = extrema(tubedata.Longitude)
# scale LatLong and flip in y to fit into current drawing
positions = @. Point(rescale(tubedata.Longitude, extrema_long..., -280, 280), rescale(tubedata.Latitude, extrema_lat..., 280, -280))
stations = tubedata[!,:Station]
find(str) = findfirst(isequal(str), stations)
find(x::Int64) = stations[x]
```
exception =
LoadError: ArgumentError: Package CSV not found in current path.
- Run `import Pkg; Pkg.add("CSV")` to install the CSV package.
Stacktrace:
[1] macro expansion
@ ./loading.jl:1772 [inlined]
[2] macro expansion
@ ./lock.jl:267 [inlined]
[3] __require(into::Module, mod::Symbol)
@ Base ./loading.jl:1753
[4] #invoke_in_world#3
@ ./essentials.jl:926 [inlined]
[5] invoke_in_world
@ ./essentials.jl:923 [inlined]
[6] require(into::Module, mod::Symbol)
@ Base ./loading.jl:1746
[7] eval
@ ./boot.jl:385 [inlined]
[8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
@ Base ./loading.jl:2076
[9] include_string (repeats 2 times)
@ ./loading.jl:2086 [inlined]
[10] #65
@ ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:907 [inlined]
[11] cd(f::Documenter.var"#65#66"{Module, MarkdownAST.CodeBlock}, dir::String)
@ Base.Filesystem ./file.jl:112
[12] runner(::Type{Documenter.Expanders.SetupBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:906
in expression starting at string:2
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Run julia-actions/julia-docdeploy@v1:
../../../.julia/packages/Documenter/2OZOh/src/utilities/utilities.jl#L46
failed to run `@example` block in src/examples.md:388-390
```@example tubesection
find("Waterloo")
```
exception =
UndefVarError: `find` not defined
Stacktrace:
[1] top-level scope
@ examples.md:389
[2] eval
@ ./boot.jl:385 [inlined]
[3] #58
@ ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:754 [inlined]
[4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:753
[6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161
[7] with_logstate(f::Function, logstate::Any)
@ Base.CoreLogging ./logging.jl:515
[8] with_logger
@ ./logging.jl:627 [inlined]
[9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer)
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:752
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Run julia-actions/julia-docdeploy@v1:
../../../.julia/packages/Documenter/2OZOh/src/utilities/utilities.jl#L46
failed to run `@example` block in src/examples.md:392-394
```@example tubesection
find(244)
```
exception =
UndefVarError: `find` not defined
Stacktrace:
[1] top-level scope
@ examples.md:393
[2] eval
@ ./boot.jl:385 [inlined]
[3] #58
@ ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:754 [inlined]
[4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:753
[6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161
[7] with_logstate(f::Function, logstate::Any)
@ Base.CoreLogging ./logging.jl:515
[8] with_logger
@ ./logging.jl:627 [inlined]
[9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer)
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:752
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Run julia-actions/julia-docdeploy@v1:
../../../.julia/packages/Documenter/2OZOh/src/utilities/utilities.jl#L46
failed to run `@example` block in src/examples.md:410-421
```@example tubesection
@DRAWSVG begin
background("grey10")
sethue("grey50")
drawgraph(g,
layout = positions,
vertexshapes = :none,
vertexlabeltextcolors = colorant"white",
vertexlabels = find.(1:nv(g)),
vertexlabelfontsizes = 6)
end
```
exception =
UndefVarError: `positions` not defined
Stacktrace:
[1] top-level scope
@ examples.md:414
[2] eval
@ ./boot.jl:385 [inlined]
[3] #58
@ ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:754 [inlined]
[4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:753
[6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161
[7] with_logstate(f::Function, logstate::Any)
@ Base.CoreLogging ./logging.jl:515
[8] with_logger
@ ./logging.jl:627 [inlined]
[9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer)
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:752
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Run julia-actions/julia-docdeploy@v1:
../../../.julia/packages/Documenter/2OZOh/src/utilities/utilities.jl#L46
failed to run `@example` block in src/examples.md:425-456
```@example tubesection
@DRAWSVG begin
background("grey20")
tiles = Tiler(800, 400, 1, 2)
sethue("white")
@layer begin
translate(first(tiles[1]))
drawgraph(g,
layout=spring,
boundingbox = BoundingBox(box(O, 400, 400)),
vertexshapes = :none,
vertexlabeltextcolors = colorant"white",
vertexlabels = find.(1:nv(g)),
vertexlabelfontsizes = 6
)
end
@layer begin
translate(first(tiles[2]))
drawgraph(g,
layout=stress,
boundingbox = BoundingBox(box(O, 400, 400)),
vertexshapes = :none,
vertexlabeltextcolors = colorant"white",
vertexlabels = find.(vertices(g)),
vertexlabelfontsizes = 6
)
end
end 800 400
```
exception =
UndefVarError: `find` not defined
Stacktrace:
[1] macro expansion
@ examples.md:433 [inlined]
[2] macro expansion
@ ~/.julia/packages/Luxor/vFOwQ/src/basics.jl:615 [inlined]
[3] top-level scope
@ examples.md:431
[4] eval
@ ./boot.jl:385 [inlined]
[5] #58
@ ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:754 [inlined]
[6] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[7] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:753
[8] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161
[9] with_logstate(f::Function, logstate::Any)
@ Base.CoreLogging ./logging.jl:515
[10] with_logger
@ ./logging.jl:627 [inlined]
[11] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer)
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158
[12] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:752
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Run julia-actions/julia-docdeploy@v1:
../../../.julia/packages/Documenter/2OZOh/src/utilities/utilities.jl#L46
failed to run `@example` block in src/examples.md:462-473
```@example tubesection
@DRAWSVG begin
background("grey90")
sethue("black")
drawgraph(g, layout=positions,
vertexshapesizes = 2,
vertexlabels = [(degree(g, n) == 1) ? find(n) : ""
for n in vertices(g)],
vertexlabeltextcolors = colorant"blue"
)
end
```
exception =
UndefVarError: `g` not defined
Stacktrace:
[1] top-level scope
@ examples.md:466
[2] eval
@ ./boot.jl:385 [inlined]
[3] #58
@ ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:754 [inlined]
[4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:753
[6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161
[7] with_logstate(f::Function, logstate::Any)
@ Base.CoreLogging ./logging.jl:515
[8] with_logger
@ ./logging.jl:627 [inlined]
[9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer)
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:752
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Run julia-actions/julia-docdeploy@v1:
../../../.julia/packages/Documenter/2OZOh/src/utilities/utilities.jl#L46
failed to run `@example` block in src/examples.md:481-483
```@example tubesection
find(argmax(degree(g, 1:nv(g))))
```
exception =
UndefVarError: `g` not defined
Stacktrace:
[1] top-level scope
@ examples.md:482
[2] eval
@ ./boot.jl:385 [inlined]
[3] #58
@ ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:754 [inlined]
[4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:753
[6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161
[7] with_logstate(f::Function, logstate::Any)
@ Base.CoreLogging ./logging.jl:515
[8] with_logger
@ ./logging.jl:627 [inlined]
[9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer)
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:752
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Run julia-actions/julia-docdeploy@v1:
../../../.julia/packages/Documenter/2OZOh/src/utilities/utilities.jl#L46
failed to run `@example` block in src/examples.md:487-489
```@example tubesection
find.(neighbors(g, find("Baker Street")))
```
exception =
UndefVarError: `find` not defined
Stacktrace:
[1] top-level scope
@ examples.md:488
[2] eval
@ ./boot.jl:385 [inlined]
[3] #58
@ ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:754 [inlined]
[4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:753
[6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161
[7] with_logstate(f::Function, logstate::Any)
@ Base.CoreLogging ./logging.jl:515
[8] with_logger
@ ./logging.jl:627 [inlined]
[9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer)
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:752
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Run julia-actions/julia-docdeploy@v1:
../../../.julia/packages/Documenter/2OZOh/src/utilities/utilities.jl#L46
failed to run `@example` block in src/examples.md:495-511
```@example tubesection
@DRAWSVG begin
background("grey10")
translate(0, -200)
scale(3)
bc = betweenness_centrality(g)
sethue("gold")
_, maxbc = extrema(bc)
drawgraph(g, layout = positions,
vertexlabels = (vtx) -> bc[vtx] > maxbc * 0.6 && string(find(vtx)),
vertexlabeltextcolors = colorant"cyan",
vertexlabelfontsizes = 6,
vertexshapesizes = 1 .+ 10bc,
vertexfillcolors = HSB.(rescale.(bc, 0, maximum(bc), 0, 300), 0.7, 0.8),
)
end 800 600
```
exception =
UndefVarError: `g` not defined
Stacktrace:
[1] top-level scope
@ examples.md:500
[2] eval
@ ./boot.jl:385 [inlined]
[3] #58
@ ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:754 [inlined]
[4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:753
[6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161
[7] with_logstate(f::Function, logstate::Any)
@ Base.CoreLogging ./logging.jl:515
[8] with_logger
@ ./logging.jl:627 [inlined]
[9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer)
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:752
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Run julia-actions/julia-docdeploy@v1:
../../../.julia/packages/Documenter/2OZOh/src/utilities/utilities.jl#L46
failed to run `@example` block in src/examples.md:517-547
```@example tubesection
heathrow_to_morningtoncrescent = a_star(g,
find("Heathrow Terminal 5"),
find("Mornington Crescent"))
@DRAWSVG begin
background("grey70")
translate(0, -100)
scale(3)
sethue("grey50")
drawgraph(g,
layout = positions,
vertexshapesizes = 1)
sethue("black")
fontsize(4)
drawgraph(g,
layout = positions,
vertexshapes = :none,
edgelist = heathrow_to_morningtoncrescent,
edgestrokeweights = 3,
vertexlabels = (vtx) -> begin
if vtx ∈ src.(heathrow_to_morningtoncrescent) ||
vtx ∈ dst.(heathrow_to_morningtoncrescent)
circle(positions[vtx], 2, :fill)
label(find(vtx), :e, positions[vtx])
end
end)
end
```
exception =
UndefVarError: `g` not defined
Stacktrace:
[1] top-level scope
@ examples.md:518
[2] eval
@ ./boot.jl:385 [inlined]
[3] #58
@ ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:754 [inlined]
[4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:753
[6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161
[7] with_logstate(f::Function, logstate::Any)
@ Base.CoreLogging ./logging.jl:515
[8] with_logger
@ ./logging.jl:627 [inlined]
[9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer)
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:752
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Run julia-actions/julia-buildpkg@v1
Consider using `julia-actions/cache` to speed up runs https://github.com/julia-actions/cache. To ignore, set input `ignore-no-cache: true`
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