pangoLEARN data release 2021-09-17

Update to pangoLEARN decision tree model and UShER pb file and lineage hashes for pango-designation v1.2.76

pangoLEARN data release 2021-09-16

Update to pangoLEARN decision tree model and UShER pb file for pango-designation v1.2.76.

pangoLEARN data release 2021-08-24

Release notes

• Update to pangoLEARN decision tree model and UShER pb file for pango-designation v1.2.66.
• Full details describing changes to lineage designations since the last release found in the pango.network explainer here.

pangoLEARN data release 2021-08-09

Release notes

• Fix for AY.3 issue in pangolin repo
• Additional AY.X sublineages added
• Other updates

A.2.5
B.1.636
P.1.8 
P.1.9
P.1.10
P.7
Q.1
Q.2
Q.3
AY.4-AY.12

PANGO_VERSION = "v1.2.56"

pangoLEARN data release 2021-07-28

Release notes

• Decision tree model trained 2021-07-28 on Pango designation v1.2.46
• Decision tree rules now zipped so they don't exceed GitHub max file size limits

pangoLEARN data release 2021-07-09

Release notes

• Decision tree model update for pango-designation v1.2.36
• ~50K additional B.1.617.2 sequences in the training set, including curation of sublineages for K417N
• New lineages B.1.351.4, A.30

pangoLEARN data release 2021-07-07-2

Release notes

• PATCH for misassignments of B.1.617.2
• Lineage designation hash updated to v1.2.36

pangoLEARN data release 2021-07-07

Release notes

• Update to decision tree model corresponding to pango-designation version 1.2.34 (see pango-designation for full details)
• A number of new lineages added since previous version (which corresponded to v1.2.13)

Updated

P.4
B.1.1.28
P.1
B.1.617.2
A.23.1
AY.2
B.60
B.1.1.519

Withdrawn

B.1.624

New lineages

B.1.1.524
B.1.1.525
B.1.1.526
B.1.400.1
B.1.575.2
P.5
B.1.621.1
B.1.624
B.1.625
B.1.626
B.1.627
B.1.628
B.1.629
AY.3

pangoLEARN data release 2021-06-15

Release notes

• Updated decision tree model corresponding to pango version v1.2.13.
• Main changes: merged in B.1.526 sublineages to parent
• Rename subset of B.1.617.2 sequences as AY.2 (n=5)

pangoLEARN data release 2021-06-05

Release notes

• New decision tree model trained from pango-designation data v1.2.12
• A number of manual fixes to the .pb file for UShER mode to address pangolin issue 217 (thanks @AngieHinrichs)