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APHL-1023-withdraw_draft_programs (#511)
* initial withdraw implementation * add test for non-draft library + only depends-on cascade delete * first check request resource id to work with * use specific withdraw resource file * return bundle and delete on ecr * fix in memory fhir repo * run code formatting * add InMemoryRepository tests * reformat code * add getEntryRequestId & isEntryRequestDelete tests * run code check * throw error if delete request entry is not present * artifacts that is owned and has composed-of relationship * run code check * update Exception thrown in in memory repo * run code check * add unsupported fhir version tests to bundle helper * rename getComponents method name --------- Co-authored-by: Ivan Baisi <[email protected]>
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66
cqf-fhir-utility/src/main/java/org/opencds/cqf/fhir/utility/visitor/WithdrawVisitor.java
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,66 @@ | ||
| package org.opencds.cqf.fhir.utility.visitor; | ||
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|
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| import ca.uhn.fhir.rest.server.exceptions.PreconditionFailedException; | ||
| import java.util.ArrayList; | ||
| import java.util.List; | ||
| import java.util.Optional; | ||
| import java.util.stream.Collectors; | ||
| import org.hl7.fhir.instance.model.api.IBase; | ||
| import org.hl7.fhir.instance.model.api.IBaseParameters; | ||
| import org.hl7.fhir.instance.model.api.IDomainResource; | ||
| import org.opencds.cqf.fhir.api.Repository; | ||
| import org.opencds.cqf.fhir.utility.BundleHelper; | ||
| import org.opencds.cqf.fhir.utility.PackageHelper; | ||
| import org.opencds.cqf.fhir.utility.adapter.KnowledgeArtifactAdapter; | ||
| import org.slf4j.Logger; | ||
| import org.slf4j.LoggerFactory; | ||
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| public class WithdrawVisitor implements KnowledgeArtifactVisitor { | ||
| private Logger log = LoggerFactory.getLogger(WithdrawVisitor.class); | ||
| String isOwnedUrl = "http://hl7.org/fhir/StructureDefinition/crmi-isOwned"; | ||
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|
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| @Override | ||
| public IBase visit( | ||
| KnowledgeArtifactAdapter rootAdapter, Repository repository, IBaseParameters operationParameters) { | ||
| if (!rootAdapter.getStatus().equals("draft")) { | ||
| throw new PreconditionFailedException("Cannot withdraw an artifact that is not in draft status"); | ||
| } | ||
| var resToUpdate = new ArrayList<IDomainResource>(); | ||
| resToUpdate.add(rootAdapter.get()); | ||
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| var resourcesToUpdate = getComponents(rootAdapter, repository, resToUpdate); | ||
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| var fhirVersion = rootAdapter.get().getStructureFhirVersionEnum(); | ||
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| var transactionBundle = BundleHelper.newBundle(fhirVersion, null, "transaction"); | ||
| for (var artifact : resourcesToUpdate) { | ||
| var entry = PackageHelper.deleteEntry(artifact); | ||
| BundleHelper.addEntry(transactionBundle, entry); | ||
| } | ||
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| return repository.transaction(transactionBundle); | ||
| } | ||
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| private List<IDomainResource> getComponents( | ||
| KnowledgeArtifactAdapter adapter, Repository repository, ArrayList<IDomainResource> resourcesToUpdate) { | ||
| adapter.getRelatedArtifactsOfType("composed-of").stream().forEach(c -> { | ||
| final var preReleaseReference = KnowledgeArtifactAdapter.getRelatedArtifactReference(c); | ||
| Optional<KnowledgeArtifactAdapter> maybeArtifact = | ||
| VisitorHelper.tryGetLatestVersion(preReleaseReference, repository); | ||
| if (maybeArtifact.isPresent()) { | ||
| if (resourcesToUpdate.stream() | ||
| .filter(rtu -> | ||
| rtu.getId().equals(maybeArtifact.get().getId().toString()) | ||
| && (rtu.getExtension().stream() | ||
| .anyMatch(ext -> ext.getUrl().equals(isOwnedUrl)))) | ||
| .collect(Collectors.toList()) | ||
| .isEmpty()) { | ||
| resourcesToUpdate.add(maybeArtifact.get().get()); | ||
| getComponents(maybeArtifact.get(), repository, resourcesToUpdate); | ||
| } | ||
| } | ||
| }); | ||
|
|
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| return resourcesToUpdate; | ||
| } | ||
| } |
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