The code in this repository reproduces the results in Matthews et al. Soybean-BioCro: a semi-mechanistic model of soybean growth. in silico Plants. https://doi.org/10.1093/insilicoplants/diab032
The version of BioCro associated with this manuscript is included as a submodule in this repository. To clone this repository with the submodule using the following github command:
git clone --recurse-submodules https://github.com/cropsinsilico/Soybean-BioCro.git
See the BioCro README to install BioCro.
To run an example run of Soybean-BioCro use the following command after installing the BioCro package:
result <- run_biocro(soybean_initial_values, soybean_parameters, soybean_weather2002, soybean_direct_modules, soybean_differential_modules, soybean_ode_solver)
The code in this repository was developed and tested on Mac OS version 10.14.6, with R version 3.6.1 and Rstudio version 1.2.1335.