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Move CI onto Github Actions & Various bug fixes #71

Merged
merged 602 commits into from
Feb 10, 2021
Merged

Move CI onto Github Actions & Various bug fixes #71

merged 602 commits into from
Feb 10, 2021

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langmm
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@langmm langmm commented Jan 28, 2021

Closes #66 #67 #70

langmm and others added 30 commits January 13, 2021 12:57
@langmm
Add alternate error that might be raised if requests is not installed.
781730c
@langmm
Change syntax for pinning version when installing via conda.
1e4c691
@langmm
Fix error where numpy_ver was unused
09b4abf
@langmm
Add 'skip_packages' keyword
1f2c48d
@langmm
Update how libroadrunner is installed in conda envs so that the depen…
ea09adc 
…dencies are skipped (numpy) and installed via conda instead of pip to avoid inconsistencies
@langmm
Fix typo
86b0c54
@langmm
Try adding fortran compiler to the conda recipe
47b5562
@langmm
Add some compiler environment variables to set printed by ygginfo
bbd1713
@langmm
Mark server/client interface tests as flaky
84511b6
@langmm
Try cleaning up some unused setup steps
f4842a3
@langmm
Add tests for astropy and rmq + conda on GHA
161f4ab
@langmm
1st attempt at combining pip & conda jobs into single matrix
bd1fa96
@langmm
Disable codecov on travis/appveyor
2d2c9bd
@langmm
Remove tabs
9cd81a3
@langmm
Replace brackets with parentheses in step names to prevent interpreta…
e6aadce 
…tion as lists
@langmm
Add back in the test on Python 3.8
208155b
@langmm
Increase number of parallel jobs
0767e69
@langmm
Add script for generating gha yaml from a version using anchors
6bd0193
@langmm
Try setting vcpkg root directory via yggconfig to test that this setu…
652637c 
…p works.
@langmm
Improve CLI for GHA yaml generation and add disclaimer that generated…
76a9d24 
… file should not be modified.
@langmm
Ensure that list of paths is unique
c4384a9
@langmm
Path TEMP directories on windows for pip AND conda
77e207d
@langmm
Use bash by default for conda on GHA.
b67afbd 
Add git pre-commit hook for checking if the GHA workflow yaml needs to be re-generated to the CLI module and update logging so that default is not INFO for all loggers.
@langmm
Fix incorrect name dependency in deploy and add tests where packages …
29f12ad 
…are not installed.
@langmm
Install old mac sdk reguardless to allow use with pyzmq>=21.0.0
e08847d
@langmm
Move base for github actions workflows outside of the workflows dir s…
b911f17 
…o it is not picked up
@langmm
Fix issue with 'on' being a bool when read by pyyaml
4124893
@langmm
Move GHA yaml generation script fully into the CLI
3b9b8cb
@langmm
Fix use of copy that may be called from a Python 2 env during install…
1be2a13 
…ation
@langmm
Don't include absence of sbml in stripped test set
75194b1
@langmm
Remove pinning to avoid czmq 4.2.1 on osx
7bd6be3
@langmm
Mark connection send/recv tests with timeout and add pytest plugin to…
41f357d 
… re-run failed tests.
@langmm
Reorganize removal of extra sh.exe from path to make it easier to mar…
ab8efaa 
…k with coverage pragma if it cannot be triggered by running in a command prompt on github actions.

Add debug message to determine why mlinker is not being run.
Add test steps for cmake on windows and mac.
Fix test for vcpkg config.
@langmm
Add test of fortran test on mac/conda combo
feb2b6d
@langmm
Only run vcpkg_dir config test on windows when vcpkg_dir is already set
d1ba2f3
@langmm
Pull in update that allows extra command to be sent to pytest
0db9559
@langmm
Only run full update inside the try/finally block
12f521c
@langmm
Remove continue-on-error flags and ensure that version of msvc matches
cc0dbf9
@langmm
Add try/finally block to attempt to clean up in event of failure to b…
1126302 
…ind server side of zmq proxy
@langmm
Change finally to only on exception
de3f49b
@langmm
Only cleanup the client and avoid call that assumes the object is ful…
f086702 
…ly initialized
@langmm
Don't install cmake on conda builds as it will be installed with MSVC
d724a25
@langmm
Add debug flags
71441fc
@langmm
Run cmake test on ubuntu as well
ff97e9d
@langmm
Print help for cmake and turn on debug message displaying the output …
32325ea 
…of compilation commands
@langmm
Fix bug in log message and add test for C/C++ model drivers
9f73529
@langmm
Catch error when no Visual Studio is found by cmake and try again wit…
122b40d 
…h the default generator
@langmm
Add pragma to ignore version specific lines and add it to the lines r…
1e60a2d 
…elated to the clang/ld conflict and remove debug messages
@langmm
Mark code specific to when git/rtools install sh.exe on path as appve…
a0f7750 
…yor specific
@langmm
Run test workflow on tag creation
ace96f3
@langmm
Add '--count' flag to testing CLI to allow reruning tests and circumv…
3976555 
…ent inability of the pytest plugin to do so for unittest.TestCase subclasses.
@langmm
Add a verbose option for the connection driver printStatus method and…
5f7626b 
… expands the printStatus messages for the server and client comms to include information about the request and response comms
@langmm
Add follow-up steps to re-run failed tests
0db1640
@langmm
Fix bug where a response comm driver would destroy a reply socket whi…
40ccae2 
…le the outgoing message containing the socket address is in the backlog queue waiting to be sent and is not counted when determining if the output comm's messages have been confirmed.
This was linked to issues Feb 10, 2021
Refactor the CLI #67
Closed
Cleanup config in conda/pip #69
Open
@langmm langmm merged commit fea7fc4 into master Feb 10, 2021
@langmm langmm mentioned this pull request Feb 10, 2021
Open
@langmm langmm deleted the langmm-gha branch February 12, 2021 02:17
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Successfully merging this pull request may close these issues.

Cleanup config in conda/pip Refactor the CLI Migrate CI to Github Actions
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@langmm