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zarr support (closes #64)#66

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mdrio wants to merge 27 commits intocrs4:developcrs4/ome_seadragon:developfrom mdrio:ref/ome_seadragon_packagemdrio/ome_seadragon:ref/ome_seadragon_packageCopy head branch name to clipboard

+1,209-366

Commits

Commits on Apr 1, 2022

• add shapeconverter, WIP

  mdrio

  committed
  91893ca

Commits on Apr 5, 2022

• add shapes module for generating shapes from dataset

  mdrio

  committed
  c6b6937

• fix contours filtering the ones with less than 3 points

  mdrio

  committed
  1cdf252

• move opencv deps to server ones

  mdrio

  committed
  71b805d

Commits on Apr 6, 2022

• restore settings relative import, tests to be fixed

  mdrio

  committed
  dd55933

• add kwargs to view get_array_dataset_shapes

  mdrio

  committed
  a09cbeb

• fix path for the dataset in get_array_dataset_shapes

  mdrio

  committed
  c2535d3

• change threshold behaviour, add variables for mask values

  mdrio

  committed
  0518cd9

• remove unused code

  mdrio

  committed
  b1f7bc7

Commits on Apr 7, 2022

• docs: first draft of shapes from array example

  Show description for 59ebc05
  lucalianas

  committed
  59ebc05

• remove DEBUG=True from settings

  mdrio

  committed
  04e549e

Commits on Apr 8, 2022

• move threshold as get parameter

  mdrio

  committed
  52f3c8e

• add zomm factor to dataset

  mdrio

  committed
  c9da846

• use bounding box in shape converter, update zoom factor

  mdrio

  committed
  83c2822

• docs: updates shapes from array example

  Show description for d12ebbe
  lucalianas

  committed
  d12ebbe

• make shapes threshold in range 0:1

  mdrio

  committed
  e2c2a39

Commits on Apr 11, 2022

• add DBScanClusterizer

  mdrio

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  ddd28c9

• clean code

  mdrio

  committed
  6657cbb

Commits on Apr 15, 2022

• fix: fixed requirements file

  lucalianas

  committed
  4287c13

Commits on Apr 21, 2022

• fix requirements for working on python 3.6.8

  mdrio

  committed
  203cbe8

Commits on Apr 22, 2022

• refactor adding ome_seadragon package, WIP

  mdrio

  committed
  2ac4c86

• refactor dzi adapters

  mdrio

  committed
  aca69c0

• add palette, move files

  mdrio

  committed
  b5255ad

• set default for Palette

  mdrio

  committed
  8d2dc4b

• fix test shapes

  mdrio

  committed
  4ebea1d

• add zarr dataset

  mdrio

  committed
  9a71c90

• WIP

  mdrio

  committed
  a66c9e8