R-CMD-check #415
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1 error and 11 warnings
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Set up R and install BiocManager
No such keg: /opt/homebrew/Cellar/[email protected]
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Set up R and install BiocManager
pkgconf 2.3.0_1 is already installed and up-to-date.
To reinstall 2.3.0_1, run:
brew reinstall pkgconf
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Set up R and install BiocManager
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated
dependents or dependents with broken linkage!
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Set up R and install BiocManager
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:
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Set up R and install BiocManager
unable to access index for repository https://www.bioconductor.org/packages/3.21/workflows/bin/macosx/big-sur-arm64/contrib/4.5:
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Set up R and install BiocManager
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:
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Run BiocCheck
unable to access index for repository https://www.bioconductor.org/packages/3.21/workflows/bin/macosx/big-sur-arm64/contrib/4.5:
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Run BiocCheck
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:
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Install remotes
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:
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Test coverage
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:
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Install system dependencies (macOS)
harfbuzz 10.1.0 is already installed and up-to-date.
To reinstall 10.1.0, run:
brew reinstall harfbuzz
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Install system dependencies (macOS)
fribidi 1.0.16 is already installed and up-to-date.
To reinstall 1.0.16, run:
brew reinstall fribidi
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Set up job
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once the workflow run has completed.
Check out repo
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Print working directory
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once the workflow run has completed.
Set up R and install BiocManager
1m 3s
1m 3s
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once the workflow run has completed.
Set up pandoc
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once the workflow run has completed.
Install remotes
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Query dependencies
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Cache R packages
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Install system dependencies (Linux)
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Install system dependencies (macOS)
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Install dependencies
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Session info
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Build, Install, Check
1m 2s
1m 2s
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Upload install log if the build/install/check step fails
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Show testthat output (windows)
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Show testthat output (non-windows)
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once the workflow run has completed.
Upload check results
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once the workflow run has completed.
Run BiocCheck
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once the workflow run has completed.
Test coverage
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once the workflow run has completed.
Deploy
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Post Cache R packages
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Post Check out repo
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Complete job
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