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GH actions: fix path to src code inside docker #2

GH actions: fix path to src code inside docker

GH actions: fix path to src code inside docker #2

Workflow file for this run

name: coverage
on:
push:
branches:
- 'master'
paths:
- 'src/**'
- 'docker/**'
- '.github/**'
pull_request:
branches:
- '*'
paths:
- 'src/**'
- 'docker/**'
- '.github/**'
jobs:
consistency-test:
name: build docker and run tests
runs-on: ubuntu-latest
continue-on-error: true
steps:
- name: Checkout
uses: actions/checkout@v3
with:
fetch-depth: 0
- name: Download test data
run: |
pip install zenodo_get && \
zenodo_get 7040177 -o /tmp/ && \
7z x /tmp/venus_clouds_v1.0.7z -o/tmp/training_data && \
rm /tmp/training_data/training_set_clouds_multiclass/s*
- name: Build docker
run: docker build docker/docker-cpu -t docker-cpu:1.0
- name: pytest
run: |
docker run --rm -v /tmp:/tmp:rw -v ${GITHUB_WORKSPACE}/src:/src:ro -e PYTHONPATH=/usr/local/lib/python3.6/dist-packages:/usr/local/lib/python3/dist-packages:/src --cpus=2 -m 20g docker-cpu:1.0 pytest --cov-report=term-missing:skip-covered --junitxml=/tmp/pytest.xml --cov=src --cov-config=src/test/.coveragerc src/test/consistency_test.py | tee /tmp/pytest-coverage.txt
- name: Pytest coverage comment
uses: MishaKav/pytest-coverage-comment@main
with:
pytest-coverage-path: /tmp/pytest-coverage.txt
junitxml-path: /tmp/pytest.xml