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Basic downstream analysis of Nanopore RNA data - transcriptome reconstruction and feature counts

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nf-core/nanornabam

Transcript reconstruction and feature counts for Nanopore long-read RNA data.

Build Status Nextflow

install with bioconda Docker

Introduction

The pipeline is built using Nextflow, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It comes with docker containers making installation trivial and results highly reproducible.

Documentation

The nf-core/nanornabam pipeline comes with documentation about the pipeline, found in the docs/ directory:

  1. Installation
  2. Pipeline configuration
  3. Running the pipeline
  4. Output and how to interpret the results
  5. Troubleshooting

Credits

nf-core/nanornabam was originally written by Laura Wratten.

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Basic downstream analysis of Nanopore RNA data - transcriptome reconstruction and feature counts

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  • Nextflow 82.6%
  • Python 10.1%
  • HTML 4.7%
  • R 2.1%
  • Dockerfile 0.5%