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Switch build from setuptools to Poetry and move tests path #303

Merged
merged 31 commits into from
Aug 18, 2023
Merged

Switch build from setuptools to Poetry and move tests path #303

merged 31 commits into from
Aug 18, 2023

Commits on Jul 4, 2023

  1. Adjusted postCreateCommand for poetry

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    kenibrewer committed Jul 4, 2023
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Commits on Jul 6, 2023

  1. Refactored to put processing in function cytomining#304

    @kenibrewer
    kenibrewer committed Jul 6, 2023
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  2. Fixed test paths

    @kenibrewer
    kenibrewer committed Jul 6, 2023
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  3. Adjusted workflows for poetry

    @kenibrewer
    kenibrewer committed Jul 6, 2023
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  4. Add pytest-cov to dependencies

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    kenibrewer committed Jul 6, 2023
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  5. Merge branch 'master' into feature/setup-pyproject-toml

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    kenibrewer committed Jul 6, 2023
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  6. Fixed python version in workflows

    @kenibrewer
    kenibrewer committed Jul 6, 2023
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  7. Fixed action version

    @kenibrewer
    kenibrewer committed Jul 6, 2023
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Commits on Jul 9, 2023

  1. Changed to new default branch name

    @kenibrewer
    kenibrewer committed Jul 9, 2023
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  2. Added Python .gitignore template content

    @kenibrewer
    kenibrewer committed Jul 9, 2023
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  3. Removed poetry export precommit hook

    @kenibrewer
    kenibrewer committed Jul 9, 2023
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  4. Merge branch 'master' into feature/setup-pyproject-toml

    @kenibrewer
    kenibrewer committed Jul 9, 2023
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  5. Added master back to workflows to allow pipelines to run during trans… 

    …ition
    @kenibrewer
    kenibrewer committed Jul 9, 2023
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  6. Changed global variables to all caps

    @kenibrewer
    kenibrewer committed Jul 9, 2023
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  7. Removed poetry-lock precommit hook

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    kenibrewer committed Jul 9, 2023
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  8. Changed poetry setup to match postCreateCommand.sh

    @kenibrewer
    kenibrewer committed Jul 9, 2023
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  9. Changed paths and files to more inclusive naming

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    kenibrewer committed Jul 9, 2023
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Commits on Jul 11, 2023

  1. Renamed test data paths

    @kenibrewer
    kenibrewer committed Jul 11, 2023
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  2. Merge branch 'master' into feature/setup-pyproject-toml

    @kenibrewer
    kenibrewer committed Jul 11, 2023
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Commits on Aug 5, 2023

  1. Update CITATION.cff and version

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    kenibrewer committed Aug 5, 2023
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Commits on Aug 7, 2023

  1. Updated collate to use sqlite3 module not CLI

    @kenibrewer
    kenibrewer committed Aug 7, 2023
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  2. Updated poetry.lock

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    kenibrewer committed Aug 7, 2023
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  3. Adjust test_DeepProfiler to use fixtures

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    kenibrewer committed Aug 7, 2023
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  4. Merge branch 'master' into feature/setup-pyproject-toml

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    kenibrewer committed Aug 7, 2023
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Commits on Aug 8, 2023

  1. Documentation updates for poetry

    @kenibrewer
    kenibrewer committed Aug 8, 2023
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  2. Fixed misconfigured assertions cytomining#314

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    kenibrewer committed Aug 8, 2023
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Commits on Aug 9, 2023

  1. Rename python-app.yml to pytest.yml

    @kenibrewer
    kenibrewer committed Aug 9, 2023
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  2. Added pytest-cov for cli arg support

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    kenibrewer committed Aug 9, 2023
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Commits on Aug 10, 2023

  1. Update author list

    @kenibrewer
    kenibrewer committed Aug 10, 2023
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  2. Add sqlite connection/cursor closing

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    kenibrewer committed Aug 10, 2023
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Commits on Aug 18, 2023

  1. Add connection.close() to collate

    @kenibrewer
    kenibrewer committed Aug 18, 2023
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