Add CITATION.cff (#219)

* add CITATION.cff

* update affliation and abstract

* Update Ivan's orcid

* black update

* relax sphinx dependencies

---------

Co-authored-by: Ivan Ivanov <[email protected]>

CITATION.cff

@@ -0,0 +1,61 @@
+# This CITATION.cff file was generated with cffinit.
+# Visit https://bit.ly/cffinit to generate yours today!
+
+cff-version: 1.2.0
+title: iohub
+message: >-
+  If you use this software, please cite it using the
+  metadata from this file.
+type: software
+authors:
+  - given-names: Ziwen
+    family-names: Liu
+    email: [email protected]
+    affiliation: Chan Zuckerberg Biohub San Francisco
+    orcid: 'https://orcid.org/0000-0001-7482-1299'
+  - given-names: Ivan
+    family-names: Ivanov
+    affiliation: Chan Zuckerberg Biohub San Francisco
+    orcid: 'https://orcid.org/0000-0001-6389-0213'
+    affiliation: Chan Zuckerberg Biohub San Francisco
+  - given-names: Jordão
+    family-names: Bragantini
+    orcid: 'https://orcid.org/0000-0001-7652-2735'
+    email: [email protected]
+    affiliation: Chan Zuckerberg Biohub San Francisco
+  - given-names: Talon
+    family-names: Chandler
+    affiliation: Chan Zuckerberg Biohub San Francisco
+    orcid: 'https://orcid.org/0000-0002-3033-674X'
+  - given-names: Ahmet Can
+    family-names: Solak
+    affiliation: Chan Zuckerberg Biohub San Francisco
+    orcid: 'https://orcid.org/0000-0002-1381-8309'
+  - given-names: Eduardo
+    family-names: Hirata-Miyasaki
+    affiliation: Chan Zuckerberg Biohub San Francisco
+    orcid: 'https://orcid.org/0000-0002-1016-2447'
+  - given-names: Cameron
+    family-names: Foltz
+    affiliation: Chan Zuckerberg Biohub San Francisco
+    orcid: 'https://orcid.org/0000-0001-8933-2172'
+  - given-names: Li-Hao
+    family-names: Yeh
+    affiliation: Chan Zuckerberg Biohub San Francisco
+    orcid: 'https://orcid.org/0000-0003-2803-5996'
+  - given-names: Shalin
+    family-names: Mehta
+    affiliation: Chan Zuckerberg Biohub San Francisco
+    orcid: 'https://orcid.org/0000-0002-2542-3582'
+repository-code: 'https://github.com/czbiohub-sf/iohub/'
+url: 'https://czbiohub-sf.github.io/iohub/'
+abstract: Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata
+keywords:
+  - python
+  - image-metadata
+  - bioimaging
+  - ndimensional-arrays
+license: BSD-3-Clause
+commit: a4d43a2a8cd8d4abce00e475f9f1699d451eba9f
+version: 0.1.0
+date-released: '2024-02-14'

iohub/upti.py

@@ -10,7 +10,6 @@
 
 
 class UPTIReader(ReaderBase):
-
     """
     Reader for UPTI raw data.
     Accepts both new live UPTI and older UPTI format.

iohub/zarrfile.py

@@ -13,7 +13,6 @@
 
 
 class ZarrReader(ReaderBase):
-
     """
     .. deprecated:: 0.0.1
         `ZarrReader` will be removed in future iohub releases,

setup.cfg

@@ -54,10 +54,10 @@ dev =
     ome-zarr>=0.6.1
 doc =
     matplotlib
-    numpydoc==1.1.0
-    sphinx==4.2.0
-    pydata-sphinx-theme==0.13.3
-    sphinx-copybutton==0.4.0
-    sphinx-multiversion==0.2.4
-    sphinx-sitemap==2.5.0
-    sphinx-gallery==0.13.0
+    numpydoc>=1.1.0
+    sphinx>=4.2.0
+    pydata-sphinx-theme>=0.15.2
+    sphinx-copybutton>=0.4.0
+    sphinx-multiversion>=0.2.4
+    sphinx-sitemap>=2.5.0
+    sphinx-gallery>=0.13.0