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Merge pull request #5 from d3b-center/bug/quote-tag-compatibility
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🤝 quoted tag for compatibility
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migbro authored Sep 20, 2023
2 parents daa85e9 + 17bf9e9 commit f8d762c
Showing 1 changed file with 4 additions and 4 deletions.
8 changes: 4 additions & 4 deletions workflows/d3b-diskin-pathogenicity-preprocess-wf.cwl
Original file line number Diff line number Diff line change
Expand Up @@ -97,7 +97,7 @@ inputs:
output_basename: {type: string, doc: "String that will be used in the output filenames.\
\ Be sure to be consistent with this as InterVar will use this too"}
annovar_db: {type: File, doc: "Annovar Database with at minimum required resources\
\ to InterVar", sbg:suggestedValue: {class: File, path: 648b2bf575423d2473af6ed8,
\ to InterVar", "sbg:suggestedValue": {class: File, path: 648b2bf575423d2473af6ed8,
name: annovar_humandb_hg38_intervar.tgz}}
annovar_db_str: {type: 'string?', doc: "Name of dir created when annovar db is un-tarred",
default: "annovar_humandb_hg38_intervar"}
Expand All @@ -117,12 +117,12 @@ inputs:
bcftools_strip_info: {type: 'string?', doc: "csv string of columns to strip if needed\
\ to avoid conflict/improve performance of a tool, i.e INFO/CSQ", default: "^INFO/DP"}
intervar_db: {type: File, doc: "InterVar Database from git repo + mim_genes.txt",
sbg:suggestedValue: {class: File, path: 648b2bf575423d2473af6ed6, name: intervardb_2021-08.tar.gz}}
"sbg:suggestedValue": {class: File, path: 648b2bf575423d2473af6ed6, name: intervardb_2021-08.tar.gz}}
intervar_db_str: {type: 'string?', doc: "Name of dir created when intervar db is\
\ un-tarred", default: "intervardb"}
intervar_ram: {type: 'int?', doc: "Min ram needed for task in GB", default: 32}
autopvs1_db: {type: File, doc: "git repo files plus a user-provided fasta reference",
sbg:suggestedValue: {class: File, path: 648b2bf575423d2473af6ed7, name: autoPVS1_references_sym_updated.tar.gz}}
"sbg:suggestedValue": {class: File, path: 648b2bf575423d2473af6ed7, name: autoPVS1_references_sym_updated.tar.gz}}
autopvs1_db_str: {type: 'string?', doc: "Name of dir created when annovar db is\
\ un-tarred", default: "data"}
outputs:
Expand Down Expand Up @@ -166,7 +166,7 @@ hints:
- class: sbg:maxNumberOfParallelInstances
value: 2
"sbg:links":
- id: 'https://github.com/d3b-center/D3b-Pathogenicity-Preprocessing/releases/tag/v1.0.1'
- id: 'https://github.com/d3b-center/D3b-Pathogenicity-Preprocessing/releases/tag/v1.0.2'
label: github-release
sbg:license: Apache License 2.0
sbg:publisher: KFDRC

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