Monthly Docker Build Validation #18
Annotations
1 error and 1 warning
buildx failed with: ERROR: failed to solve: process "/bin/sh -c apt update && apt install -y build-essential git cmake curl python python-pip gawk autoconf libcurl4-openssl-dev libz-dev liblzma-dev libssl-dev bsdmainutils libncurses5-dev libbz2-dev && pip install pysam numpy==1.16.5 && curl -OL https://github.com/samtools/samtools/releases/download/1.8/samtools-1.8.tar.bz2 && tar -xjf samtools-1.8.tar.bz2 && rm samtools-1.8.tar.bz2 && cd /samtools-1.8 && ./configure && make && make install && cd / && git clone https://github.com/GregoryFaust/samblaster && cd samblaster && make && cp samblaster /usr/local/bin/. && cd / && rm -rf samblaster && curl -OL https://github.com/biod/sambamba/releases/download/v0.6.7/sambamba_v0.6.7_linux.tar.bz2 && tar -xjf sambamba_v0.6.7_linux.tar.bz2 && rm sambamba_v0.6.7_linux.tar.bz2 && mv ./sambamba /usr/local/bin/ && curl -OL https://github.com/arq5x/lumpy-sv/releases/download/${LUMPY_VERSION}/lumpy-sv-v${LUMPY_VERSION}.tar.gz && tar -xzf lumpy-sv-v${LUMPY_VERSION}.tar.gz && rm lumpy-sv-v${LUMPY_VERSION}.tar.gz && mv lumpy-sv-v${LUMPY_VERSION} lumpy-sv && cd lumpy-sv && make && mv /lumpyexpress_mod bin/lumpyexpress && chmod 755 bin/lumpyexpress && cp bin/* /usr/local/bin/. && apt remove -y curl && apt autoclean -y && apt autoremove -y" did not complete successfully: exit code: 1
|
The following actions uses Node.js version which is deprecated and will be forced to run on node20: docker/setup-buildx-action@v2, docker/build-push-action@v4. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
|
This job failed
Loading