Monthly Docker Pull Validation #20

Run time

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Job	Run time
Get Changed Dockerfiles Matrix	4s
Pull BIC-seq2/0.7.2	27s
Pull FusionAnnotator/0.1.1	15s
Pull FusionCatcher/latest	25s
Pull LOH/1.0.0	22s
Pull LOH/1.0.1	24s
Pull LinkedSV/latest	26s
Pull PureCN	1s
Pull SVTyper/0.7.1	15s
Pull THetA2/0.7.0	2s
Pull THetA2/0.7.1	48s
Pull VEP/r93_v2	25s
Pull VEP/r93	26s
Pull VEP/r98	21s
Pull VEP/r93.7	32s
Pull VEP/r94	21s
Pull VarDictJava/1.5.8	21s
Pull VarDictJava/fp_filter	10s
Pull VarDictJava/1.7.0	22s
Pull WGSA	3s
Pull add-strelka2-fields/1.0.0	17s
Pull annoFuse/0.91.0	52s
Pull annoFuse/0.92.0	42s
Pull annoFuse/0.90.0	33s
Pull annotsv/3.1.1	12s
Pull annovar/latest	11s
Pull arriba/2.2.1	20s
Pull arriba/latest	30s
Pull arriba/1.0.1	25s
Pull arriba/1.1.0	25s
Pull autopvs1/v2.0.0	11s
Pull autopvs1/v1.0.1	14s
Pull bcbio/variation_recall-0.2.4	17s
Pull bcftools/1.20	12s
Pull bed_tools/bedopsv2.4.36_plus_bedtools	7s
Pull bvcftools	7s
Pull bwa/0.7.17-r1188	5s
Pull bwa/latest	2s
Pull bwa/0.7.15-r1140	2s
Pull bwa-bundle/0.1.17	3s
Pull bwa-picard/broad	5s
Pull bwa-picard/latest	5s
Pull bwa-samtools	2s
Pull canvas/1.11.0	12s
Pull cellranger/6.0	47s
Pull cellranger/5.0	42s
Pull cellranger/6.1.2	42s
Pull cellranger/3.1	59s
Pull cnvnator/v0.4.1	15s
Pull codex2/3.8	1m 17s
Pull consensus-merge/1.0.0	21s
Pull consensus-merge/1.1.0	19s
Pull controlfreec/11.5	25s
Pull cutadapt/latest	15s
Pull cutadapt/3.4	16s
Pull cutesv/1.0.13	18s
Pull cutesv/2.0.3	13s
Pull echtvar/0.2.0	5s
Pull echtvar/0.1.9	10s
Pull echtvar/0.2.0-rc	34s
Pull fastqc/v0.11.9	18s
Pull freebayes/v1.3.2	16s
Pull freebayes/v1.3.1	10s
Pull gatk/4.beta.1	32s
Pull gatk/3.5-0-g36282e4	5s
Pull gatk/4.beta.6-tabix	23s
Pull gatk/4.0.1.2	17s
Pull gatk/3.6-0-g89b7209	4s
Pull gatk/4.0.1.0	17s
Pull gatk/3.8	6s
Pull gatk/latest	16s
Pull gatk/4.2.0.0R	39s
Pull gatk/4.0.12.0	27s
Pull gatk/4.beta.1-3.5	37s
Pull gatk/3.8_ubuntu	23s
Pull gatk/4.1.1.0	24s
Pull gatk/4.beta.5-tabix	29s
Pull gatk/4.0.5.2	24s
Pull gatk/4.1.7.0R	35s
Pull gatk/4.beta.5	15s
Pull gatk/4.beta.6	15s
Pull gatk-picard/4.0.1.2-2.8.3	21s
Pull gatk-picard/4.beta.1-2.8.3	15s
Pull gistic	2s
Pull hbc_scrna_qc/scrnaseq	46s
Pull hisat2/2.2.1	9s
Pull hotspots/0.1.0	11s
Pull intervar/v2.2.1	12s
Pull isoseq/v4.0.0	7s
Pull kf_vcf2maf/v1.0.0	8s
Pull kf_vcf2maf/v1.0.3	19s
Pull kf_vcf2maf/v1.0.2	18s
Pull kf_vcf2maf/v1.0.1	18s
Pull lancet/1.0.7	13s
Pull lancet/1.1.x	12s
Pull lima/v2.9.0	4s
Pull loompy/2.0.16	40s
Pull lumpy-sv/0.2.13	26s
Pull lumpy-sv/0.3.0	4s
Pull manta/1.6.0	8s
Pull manta/1.4	11s
Pull mend_qc	1s
Pull minimap2/v2.28	10s
Pull msisensor/1.1.a	33s
Pull nanocount/v1.1.0	16s
Pull ngscheckmate/1.3	11s
Pull octopus/0.6.3-beta	2m 2s
Pull pbfusion/v0.4.1	3s
Pull pbta-splicing/0.1	55s
Pull peddy/v0.4.7	26s
Pull peddy/v0.4.2	20s
Pull phlat/1.0.0	23s
Pull picard/2.18.9R	22s
Pull picard/2.14.0	4s
Pull picard/latest	4s
Pull picard/2.15.0	8s
Pull picard/2.8.3	5s
Pull picard/2.17.4	4s
Pull picard/2.18.9	13s
Pull picard-r/picard2.15.0-r.3.3.3	7s
Pull picard-r/picard2.8.3-r3.3.3	7s
Pull pigeon/v1.2.0	4s
Pull pizzly/latest	15s
Pull plink/1.90b7.2	6s
Pull pypy/3	27s
Pull pyspark/3.1.2	44s
Pull python/3.9-canine-util	24s
Pull python/2.7.13	7s
Pull sambamba/0.6.3	10s
Pull sambamba/0.7.1	5s
Pull samtools/1.7-11-g041220d	16s
Pull samtools/1.3.1	3s
Pull samtools/latest	8s
Pull samtools/1.6	3s
Pull samtools/1.15.1	10s
Pull samtools/1.9	8s
Pull samtools/1.20-parallel	12s
Pull sanger/caveman-pindel/latest	1s
Pull scRNA_qc/v1.1.0	41s
Pull scRNA_qc/v1.0.0	48s
Pull scRNA_qc/v1.0.1	35s
Pull scdblfinder/1.8.0	1m 1s
Pull scdblfinder/v1.12.0	38s
Pull scrublet/0.2.3	26s
Pull sentieon/202112.01_hifi	14s
Pull seqkit/2.3.1	6s
Pull sequenza/3.0.0	25s
Pull seurat/latest	9s
Pull smoove/0.2.5	18s
Pull sniffles/2.0.7	12s
Pull sniffles/2.0.3	9s
Pull snpEff	1s
Pull snpEff/4.3t	13s
Pull soupx_R/1.6.2	36s
Pull soupx_R/4.1.0_SoupX	51s
Pull speedseq/latest	37s
Pull star/2.6.1d	4s
Pull star/fusion-1.5.0	9s
Pull star/2.7.10a	4s
Pull star/fusion-1.10.1	31s
Pull star/2.7.11a	5s
Pull star/2.7.10b	5s
Pull star/2.7.5a	7s
Pull stranded/1.0.0	23s
Pull stranded/1.1.0	26s
Pull strelka/v2.9.10	4s
Pull supremo/1.0.0	2m 13s
Pull sv2/latest	3s
Pull svaba/1.1.0	10s
Pull t1k/v1.0.5	10s
Pull t1k/v1.0.2	10s
Pull tidyverse/3.6.1-canine-util	29s
Pull toolkit_immune_deconvolution/1.0.0	41s
Pull toolkit_subtyping/subtyping_v1.0	57s
Pull toolkit_subtyping/subtyping_v1.1	55s
Pull toolkit_subtyping/subtyping_v2.0	1m 35s
Pull toolkit_subtyping/4.1.0R	47s
Pull toolkit_subtyping/pyreader0.4.4	52s
Pull toolkit_tmb/1.0.0	33s
Pull tumor-only-benchmarking/1.0.0	40s
Pull vcf_utils	4s
Pull velocyto/0.17.17	17s
Pull verifybamid/latest	8s
Pull verifybamid/1.0.2	8s
Pull verifybamid/1.0.1	4s
Pull zumis/2.9.4	54s
	1h 4m 20s

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Monthly Docker Pull Validation #20

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Monthly Docker Pull Validation #20

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