updating image functionality (including samtools and bc) (#246) #37
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| name: Latest Merged Dockerfile Build and Push | |
| on: | |
| push: | |
| branches: | |
| - 'master' | |
| - 'main' | |
| paths: | |
| - '**/Dockerfile' | |
| jobs: | |
| changed-dockerfiles: | |
| name: Get Changed Dockerfiles Matrix | |
| runs-on: ubuntu-22.04 | |
| outputs: | |
| matrix: ${{ steps.set-matrix.outputs.matrix }} | |
| steps: | |
| - id: checkout | |
| uses: actions/checkout@v3 | |
| name: Checkout Repo | |
| with: | |
| fetch-depth: 0 | |
| - id: changed-files-docker | |
| uses: tj-actions/changed-files@v41 | |
| name: Get Changed Dockerfiles | |
| with: | |
| files: | | |
| **/Dockerfile | |
| - id: set-matrix | |
| name: Changed Dockerfiles String to Matrix | |
| run: | | |
| # From a space separated list of files, split by space, and set grandparent/parent dirnames as image/tag | |
| # Image names are always lowercase! | |
| # If no version directory exists, default to latest | |
| # "BANANA/1.0/Dockerfile panda/2.1/Dockerfile gatk/Dockerfile" -> [{"path":"BANANA/1.0", "image":"banana", "tag":"1.0"}, {"path": "panda/2.1", "image":"panda", "tag":"2.1"}, {"path": "gatk", "image":"gatk", "tag":"latest"}] | |
| MATRIX=$(echo ${{ steps.changed-files-docker.outputs.all_changed_files }} | jq -Rr 'split(" ") | map(rtrimstr("/Dockerfile")) | map({"path": ., "image": (. | split("/")[0] | ascii_downcase), "tag": (. | split("/")[1] // "latest")}) | @json') | |
| echo "matrix=$MATRIX" >> $GITHUB_OUTPUT | |
| build-dockerfiles: | |
| name: Build ${{ matrix.image }}:${{ matrix.tag }} | |
| needs: changed-dockerfiles | |
| runs-on: ubuntu-22.04 | |
| strategy: | |
| matrix: | |
| include: ${{ fromJSON(needs.changed-dockerfiles.outputs.matrix) }} | |
| steps: | |
| - id: cavatica-login | |
| name: Login to Cavatica | |
| uses: docker/login-action@v2 | |
| with: | |
| registry: pgc-images.sbgenomics.com | |
| username: ${{ secrets.CAVATICA_USERNAME }} | |
| password: ${{ secrets.CAVATICA_TOKEN }} | |
| - id: docker-buildx-setup | |
| name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v2 | |
| - id: test-build | |
| name: Test Build Dockerfile | |
| uses: docker/build-push-action@v4 | |
| with: | |
| push: true | |
| context: "{{defaultContext}}:${{ matrix.path }}" | |
| tags: pgc-images.sbgenomics.com/${{ secrets.CAVATICA_USERNAME }}/${{ matrix.image }}:${{ matrix.tag }} |