add new parsed params

daler · Apr 14, 2024 · 5a4e73f · 5a4e73f
1 parent 0bc9691
commit 5a4e73f
Showing 1 changed file with 167 additions and 6 deletions.
diff --git a/trackhub/parsed_params.py b/trackhub/parsed_params.py
@@ -132,7 +132,21 @@
         fmt=['bamSkipPrintQualScore .'],
         types=['bam'],
         required=False,
-        validator=set(['.'])),
+        validator=str),
+
+    Param(
+        name="barChartBarMinPadding",
+        fmt=['barChartBarMinPadding <num>'],
+        types=['bigBarChart'],
+        required=False,
+        validator=str),
+
+    Param(
+        name="barChartBarMinWidth",
+        fmt=['barChartBarMinWidth <num>'],
+        types=['bigBarChart'],
+        required=False,
+        validator=str),
 
     Param(
         name="barChartBars",
@@ -155,6 +169,13 @@
         required=False,
         validator=str),
 
+    Param(
+        name="barChartFacets",
+        fmt=['barChartFacets <column1,column2,...columnN>'],
+        types=['bigBarChart'],
+        required=False,
+        validator=str),
+
     Param(
         name="barChartLabel",
         fmt=['barChartLabel <label>'],
@@ -174,7 +195,14 @@
         fmt=['barChartMaxSize <small/medium/large>'],
         types=['bigBarChart'],
         required=False,
-        validator=['small', 'medium', 'large']),
+        validator=str),
+
+    Param(
+        name="barChartMerge",
+        fmt=['barChartMerge on'],
+        types=['bigBarChart'],
+        required=False,
+        validator=str),
 
     Param(
         name="barChartMetric",
@@ -197,6 +225,20 @@
         required=False,
         validator=str),
 
+    Param(
+        name="barChartStatsUrl",
+        fmt=['barChartStatsUrl <url>'],
+        types=['bigBarChart'],
+        required=False,
+        validator=str),
+
+    Param(
+        name="barChartStretchToItem",
+        fmt=['barChartStretchToItem on'],
+        types=['bigBarChart'],
+        required=False,
+        validator=str),
+
     Param(
         name="barChartUnit",
         fmt=['barChartUnit <unit>'],
@@ -333,6 +375,13 @@
         required=False,
         validator=str),
 
+    Param(
+        name="decorator",
+        fmt=['decorator.default.*'],
+        types=['bigBed', 'bigGenePred', 'bigPsl'],
+        required=False,
+        validator=str),
+
     Param(
         name="defaultLabelFields",
         fmt=['defaultLabelFields <fieldName[,fieldName]>'],
@@ -345,7 +394,21 @@
         fmt=['denseCoverage <maxVal>'],
         types=['bigBed'],
         required=False,
-        validator=float),
+        validator=str),
+
+    Param(
+        name="detailsDynamicTable",
+        fmt=['detailsDynamicTable <fieldName1|table title,fieldName2|table title,...>'],
+        types=['bigBed'],
+        required=False,
+        validator=str),
+
+    Param(
+        name="detailsStaticTable",
+        fmt=['detailsStaticTable <url/relativePath>'],
+        types=['bigBed'],
+        required=False,
+        validator=str),
 
     Param(
         name="dimensionAchecked",
@@ -380,7 +443,14 @@
         fmt=['doWiggle on'],
         types=['bam'],
         required=False,
-        validator=set(['on'])),
+        validator=str),
+
+    Param(
+        name="downloadUrl",
+        fmt=['downloadUrl <label> <URL>'],
+        types=['all'],
+        required=False,
+        validator=str),
 
     Param(
         name="dragAndDrop",
@@ -403,6 +473,20 @@
         required=False,
         validator=str),
 
+    Param(
+        name="extraDetailsTable",
+        fmt=['extraDetailsTable <url/relativePath>'],
+        types=['bigBed'],
+        required=False,
+        validator=str),
+
+    Param(
+        name="extraTableFields",
+        fmt=['extraTableFields <fieldName1|table title,fieldName2|table title,...>'],
+        types=['bigBed'],
+        required=False,
+        validator=str),
+
     Param(
         name="filter",
         fmt=['filter.<fieldName> <default integer>', 'filterByRange.<fieldName> <off/on>', 'filterLimits.<fieldName> <low>[:<high>]'],
@@ -523,6 +607,20 @@
         required=False,
         validator=str),
 
+    Param(
+        name="hicDistanceMax",
+        fmt=['hicDistanceMax <integer>'],
+        types=['hic'],
+        required=False,
+        validator=str),
+
+    Param(
+        name="hicDistanceMin",
+        fmt=['hicDistanceMin <integer>'],
+        types=['hic'],
+        required=False,
+        validator=str),
+
     Param(
         name="hideEmptySubtracks",
         fmt=['hideEmptySubtracks <on/off>'],
@@ -665,6 +763,13 @@
         required=False,
         validator=str),
 
+    Param(
+        name="logo",
+        fmt=['logo on'],
+        types=['bigWig'],
+        required=False,
+        validator=str),
+
     Param(
         name="lollyField",
         fmt=['lollyField <integer>'],
@@ -713,7 +818,14 @@
         fmt=['maxLimit<#>'],
         types=['bigBarChart'],
         required=False,
-        validator=int),
+        validator=str),
+
+    Param(
+        name="maxWindowCoverage",
+        fmt=['maxWindowCoverage <integer>'],
+        types=['bam', 'bigWig'],
+        required=False,
+        validator=str),
 
     Param(
         name="maxWindowToDraw",
@@ -771,6 +883,20 @@
         required=False,
         validator=str),
 
+    Param(
+        name="mouseOverFunction",
+        fmt=['mouseOverFunction <noAverage>'],
+        types=['bigWig'],
+        required=False,
+        validator=str),
+
+    Param(
+        name="multiRegionsBedUrl",
+        fmt=['multiRegionsBedUrl <url/relativePath>'],
+        types=['all'],
+        required=False,
+        validator=str),
+
     Param(
         name="negateValues",
         fmt=['negateValues <on>'],
@@ -821,6 +947,13 @@
         required=False,
         validator=str),
 
+    Param(
+        name="otherTwoBitUrl",
+        fmt=['otherTwoBitUrl <url/relativePath>'],
+        types=['bigChain', 'bigPsl'],
+        required=False,
+        validator=str),
+
     Param(
         name="pairEndsByName",
         fmt=['pairEndsByName .'],
@@ -968,7 +1101,14 @@
         fmt=['showDiffBasesAllScales on'],
         types=['all'],
         required=False,
-        validator=set(['on'])),
+        validator=str),
+
+    Param(
+        name="showDiffBasesMaxZoom",
+        fmt=['showDiffBasesMaxZoom <basesPerPixel>'],
+        types=['all'],
+        required=False,
+        validator=str),
 
     Param(
         name="showNames",
@@ -1112,6 +1252,27 @@
         required=False,
         validator=str),
 
+    Param(
+        name="vcfDoFilter",
+        fmt=['vcfDoFilter <on/off>'],
+        types=['vcfPhasedTrio', 'vcfTabix'],
+        required=False,
+        validator=str),
+
+    Param(
+        name="vcfDoMaf",
+        fmt=['vcfDoMaf <on/off>'],
+        types=['vcfPhasedTrio', 'vcfTabix'],
+        required=False,
+        validator=str),
+
+    Param(
+        name="vcfDoQual",
+        fmt=['vcfDoQual <on/off>'],
+        types=['vcfPhasedTrio', 'vcfTabix'],
+        required=False,
+        validator=str),
+
     Param(
         name="vcfParentSamples",
         fmt=['vcfParentSamples <sampleName|altName,sampleName|altName>'],