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adding docs for caDSR import (linkml#143)
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cmungall authored Aug 16, 2024
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17 changes: 17 additions & 0 deletions docs/packages/importers.rst
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Expand Up @@ -64,6 +64,21 @@ For example, for the `RNA Central public database <https://rnacentral.org/help/p
schemauto import-sql postgresql+psycopg2://reader:[email protected]:5432/pfmegrnargs
Importing from caDSR
---------

caDSR is an ISO-11179 compliant metadata registry. The ISO-11179 conceptual model can be mapped to LinkML. The
canonical mapping maps a CDE onto a LinkML *slot*.

See `this entry in LinkML FAQ <https://linkml.io/linkml/faq/why-linkml.html#why-should-i-use-linkml-over-iso-11179>`_.

NCI implements a JSON serialization of ISO-11197. You can import this JSON and convert to LinkML:

.. code-block::
schemauto import-cadsr "cdes/*.json"
Packages
-------

Expand All @@ -81,3 +96,5 @@ Packages
.. autoclass:: DOSDPImportEngine
:members:

.. autoclass:: CADSRImportEngine
:members:
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