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Template repo for Data Science for Biomedical Informatics (BMIN503/EPID600) final project

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daniellekellier/BMIN503_Final_Project

 
 

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BMIN503/EPID600 Final Project (Danielle Kellier)

This repository contains code for a predictive model for abnormal findings on imaging based on symptom profile.

Subfolders

  • raw_data/: sensitive health information and added to .gitignore

  • final_project_template_files/: stores figure used in html file

##Files

  • Additional ICD Codes.xlsx: Excel file of conditions relevant to headache studies and their associated ICD codes. Used for removing cases with prior abnormalities

  • load_data.R: script with code generated from RedCap that reads and processes CSV data stored in a RedCap database and saves data as feather files due to their size.

  • renv.lock: specifies packages that were installed and used. This involves the (renv package)[https://cran.r-project.org/web/packages/renv/index.html] which can be installed and used to recreate the package environment

  • references.bib: contains references to journal articles mentioned within the report

Ignored

  • raw_data/: mentioned above
  • .RData: added to reduce chances of sensitive data being pushed to GitHub

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Template repo for Data Science for Biomedical Informatics (BMIN503/EPID600) final project

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  • HTML 75.3%
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  • TeX 1.9%