CaNetiCs

Calcium Network dynamiC.s

python software wrapper for dimensionality reduction analysis of neuronal network dynamics recorded with calcium imaging.

Two Major Modules:

1. generation - for generating and simulating artificial neuronal networks based on point processes

2. analysis - for analyzing data collected with calcium imaging

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To install:

• git clone https://github.com/dannycarbonero/CaNetiCs/
• cd CaNetiCs
• conda env create -f environment.yml -n "YOUR ENVIRONMENT NAME"
• conda activate "YOUR ENVIRONMENT NAME"
• pip install

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Package Recommendations for Further External Analyses

• Correlation Analysis: numpy
• Granger Causality: stattstools
• Statistical Testing: scipy.stats