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DataJoint

Open-source tools for computational data pipelines.

Welcome to DataJoint!

DataJoint for Python is an open-source framework for scientific data pipelines based on the relational data model. DataJoint prescribes a consistent method for organizing, populating, computing, and querying data.

In this GitHub Organization, you will find the source code for DataJoint, as well as tutorials and example pipelines.

Data Pipeline Example

pipeline

Yatsenko et al., bioRxiv 2021

Getting Started

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  1. datajoint-python datajoint-python Public

    Relational data pipelines for the science lab

    Python 177 86

  2. datajoint-tutorials datajoint-tutorials Public

    Getting started materials for DataJoint - with Calcium Imaging, Electrophysiology, Machine Learning examples

    Jupyter Notebook 12 136

  3. element-array-ephys element-array-ephys Public

    DataJoint Element for Neuropixels analysis with Kilosort

    Python 5 36

  4. element-calcium-imaging element-calcium-imaging Public

    DataJoint Element for multi-photon calcium imaging analysis with CaImAn, Suite2p, and EXTRACT

    Jupyter Notebook 11 48

Repositories

Showing 10 of 92 repositories
  • datajoint-feedstock Public Forked from conda-forge/datajoint-feedstock

    A conda-smithy repository for datajoint.

    datajoint/datajoint-feedstock’s past year of commit activity
    0 BSD-3-Clause 6 1 0 Updated May 4, 2025
  • nginx-docker Public
    datajoint/nginx-docker’s past year of commit activity
    Python 1 5 1 0 Updated May 3, 2025
  • datajoint-python Public

    Relational data pipelines for the science lab

    datajoint/datajoint-python’s past year of commit activity
    Python 177 LGPL-2.1 86 36 2 Updated May 3, 2025
  • djlabhub-docker Public

    A docker image optimized for deploying to JupyterHub a JupyterLab environment with DataJoint Python.

    datajoint/djlabhub-docker’s past year of commit activity
    Python 3 6 6 2 Updated May 1, 2025
  • element-array-ephys Public

    DataJoint Element for Neuropixels analysis with Kilosort

    datajoint/element-array-ephys’s past year of commit activity
    Python 5 MIT 36 26 (2 issues need help) 0 Updated Apr 21, 2025
  • datajoint-docs Public

    Landing Page for DataJoint Documentation

    datajoint/datajoint-docs’s past year of commit activity
    CSS 5 MIT 11 2 0 Updated Apr 17, 2025
  • suite2p Public Forked from MouseLand/suite2p

    cell detection in calcium imaging recordings

    datajoint/suite2p’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 253 0 0 Updated Apr 17, 2025
  • element-deeplabcut Public

    DataJoint Element for behavioral analysis with DeepLabCut

    datajoint/element-deeplabcut’s past year of commit activity
    Jupyter Notebook 13 MIT 39 8 (1 issue needs help) 0 Updated Apr 17, 2025
  • element-moseq Public

    DataJoint Element for Motion Sequencing with Keypoint-MoSeq

    datajoint/element-moseq’s past year of commit activity
    Jupyter Notebook 3 MIT 4 0 0 Updated Apr 12, 2025
  • datajoint-specs Public

    DataJoint Specifications

    datajoint/datajoint-specs’s past year of commit activity
    0 1 0 0 Updated Mar 25, 2025

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