Issue/175 Template Engine for HTML UIs

dsf-bpe/dsf-bpe-server/src/main/java/dev/dsf/bpe/subscription/TaskHandler.java

@@ -312,8 +312,7 @@ private ProcessDefinition getProcessDefinition(String processDomain, String proc
 		if (processVersion != null && !processVersion.isBlank())
 			return repositoryService.createProcessDefinitionQuery().active()
 					.processDefinitionKey(processDomain + "_" + processDefinitionKey).versionTag(processVersion).list()
-					.stream().sorted(Comparator.comparing(ProcessDefinition::getVersion).reversed()).findFirst()
-					.orElse(null);
+					.stream().max(Comparator.comparing(ProcessDefinition::getVersion)).orElse(null);
 		else
 			return repositoryService.createProcessDefinitionQuery().active()
 					.processDefinitionKey(processDomain + "_" + processDefinitionKey).latestVersion().singleResult();

dsf-bpe/dsf-bpe-server/src/main/java/dev/dsf/bpe/webservice/ProcessService.java

@@ -4,6 +4,7 @@
 import java.io.IOException;
 import java.nio.charset.StandardCharsets;
 import java.util.Base64;
+import java.util.Comparator;
 import java.util.Objects;
 import java.util.function.Consumer;
 
@@ -101,7 +102,8 @@ private ProcessDefinition getProcessDefinition(String processDefinitionKey, Stri
 	{
 		if (versionTag != null && !versionTag.isBlank())
 			return repositoryService.createProcessDefinitionQuery().processDefinitionKey(processDefinitionKey)
-					.versionTag(versionTag).singleResult();
+					.versionTag(versionTag).list().stream().max(Comparator.comparing(ProcessDefinition::getVersion))
+					.orElse(null);
 		else
 			return repositoryService.createProcessDefinitionQuery().processDefinitionKey(processDefinitionKey)
 					.latestVersion().singleResult();

dsf-bpe/dsf-bpe-server/src/main/java/dev/dsf/bpe/webservice/RootService.java

@@ -74,7 +74,7 @@ private List<ProcessEntry> processes()
 		return repositoryService.createProcessDefinitionQuery().active().unlimitedList().stream()
 				.map(def -> new ProcessEntry("Process/" + def.getKey() + "/" + def.getVersionTag(),
 						def.getKey() + " | " + def.getVersionTag()))
-				.sorted(Comparator.comparing(ProcessEntry::value)).toList();
+				.sorted(Comparator.comparing(ProcessEntry::value)).distinct().toList();
 	}
 
 	private List<String> processInstances()

dsf-fhir/dsf-fhir-server/src/main/java/dev/dsf/fhir/adapter/AbstractSearchSet.java

@@ -96,9 +96,9 @@ protected void doSetVariables(BiConsumer<String, Object> variables, Bundle resou
 
 		int currentPage = getPage(params);
 		int count = getCount(params, defaultPageCount);
-		int maxPages = (int) Math.ceil((double) resource.getTotal() / count);
+		int maxPages = count <= 0 ? 0 : (int) Math.ceil((double) resource.getTotal() / count);
 		int offset = Math.multiplyExact(currentPage - 1, count);
-		int firstResource = Integer.MAX_VALUE - 1 < offset ? 0 : offset + 1;
+		int firstResource = count == 0 ? 0 : Integer.MAX_VALUE - 1 < offset ? 0 : offset + 1;
 		int lastResource = Integer.MAX_VALUE - matchResources.size() < offset ? 0 : offset + matchResources.size();
 
 		long includeResources = resource.getEntry().stream().filter(
@@ -142,11 +142,11 @@ private int getPage(MultivaluedMap<String, String> params)
 			}
 			catch (NumberFormatException e)
 			{
-				return 1;
+				return 0;
 			}
 		}
 		else
-			return 1;
+			return 0;
 	}
 
 	private int getCount(MultivaluedMap<String, String> params, int defaultPageCount)

dsf-fhir/dsf-fhir-server/src/main/java/dev/dsf/fhir/authorization/AbstractAuthorizationRule.java

@@ -33,6 +33,7 @@
 import dev.dsf.fhir.dao.ResourceDao;
 import dev.dsf.fhir.dao.provider.DaoProvider;
 import dev.dsf.fhir.help.ParameterConverter;
+import dev.dsf.fhir.search.PageAndCount;
 import dev.dsf.fhir.search.PartialResult;
 import dev.dsf.fhir.search.SearchQuery;
 import dev.dsf.fhir.search.SearchQueryParameterError;
@@ -189,7 +190,7 @@ protected final boolean organizationWithIdentifierExists(Connection connection,
 		Map<String, List<String>> queryParameters = Map.of("identifier",
 				Collections.singletonList(iSystem + "|" + iValue));
 		OrganizationDao dao = daoProvider.getOrganizationDao();
-		SearchQuery<Organization> query = dao.createSearchQueryWithoutUserFilter(0, 0)
+		SearchQuery<Organization> query = dao.createSearchQueryWithoutUserFilter(PageAndCount.exists())
 				.configureParameters(queryParameters);
 
 		List<SearchQueryParameterError> uQp = query.getUnsupportedQueryParameters();
@@ -223,7 +224,7 @@ protected final boolean roleExists(Connection connection, Coding coding)
 		Map<String, List<String>> queryParameters = Map.of("url",
 				Collections.singletonList(cSystem + (coding.hasVersion() ? "|" + cVersion : "")));
 		CodeSystemDao dao = daoProvider.getCodeSystemDao();
-		SearchQuery<CodeSystem> query = dao.createSearchQueryWithoutUserFilter(1, 1)
+		SearchQuery<CodeSystem> query = dao.createSearchQueryWithoutUserFilter(PageAndCount.single())
 				.configureParameters(queryParameters);
 
 		List<SearchQueryParameterError> uQp = query.getUnsupportedQueryParameters();

dsf-fhir/dsf-fhir-server/src/main/java/dev/dsf/fhir/authorization/EndpointAuthorizationRule.java

@@ -21,6 +21,7 @@
 import dev.dsf.fhir.dao.EndpointDao;
 import dev.dsf.fhir.dao.provider.DaoProvider;
 import dev.dsf.fhir.help.ParameterConverter;
+import dev.dsf.fhir.search.PageAndCount;
 import dev.dsf.fhir.search.PartialResult;
 import dev.dsf.fhir.search.SearchQuery;
 import dev.dsf.fhir.search.SearchQueryParameterError;
@@ -31,7 +32,7 @@ public class EndpointAuthorizationRule extends AbstractMetaTagAuthorizationRule<
 	private static final Logger logger = LoggerFactory.getLogger(EndpointAuthorizationRule.class);
 
 	private static final String ENDPOINT_IDENTIFIER_SYSTEM = "http://dsf.dev/sid/endpoint-identifier";
-	private static final String ENDPOINT_ADDRESS_PATTERN_STRING = "https://([0-9a-zA-Z\\.-]+)+(:\\d{1,4})?([-\\w/]*)";
+	private static final String ENDPOINT_ADDRESS_PATTERN_STRING = "https://[0-9a-zA-Z.-]+(?::\\d{1,4})?[-\\w/]*";
 	private static final Pattern ENDPOINT_ADDRESS_PATTERN = Pattern.compile(ENDPOINT_ADDRESS_PATTERN_STRING);
 
 	public EndpointAuthorizationRule(DaoProvider daoProvider, String serverBase, ReferenceResolver referenceResolver,
@@ -111,7 +112,8 @@ private boolean endpointWithAddressExists(Connection connection, String address)
 	{
 		Map<String, List<String>> queryParameters = Map.of("address", Collections.singletonList(address));
 		EndpointDao dao = getDao();
-		SearchQuery<Endpoint> query = dao.createSearchQueryWithoutUserFilter(0, 0).configureParameters(queryParameters);
+		SearchQuery<Endpoint> query = dao.createSearchQueryWithoutUserFilter(PageAndCount.exists())
+				.configureParameters(queryParameters);
 
 		List<SearchQueryParameterError> uQp = query.getUnsupportedQueryParameters();
 		if (!uQp.isEmpty())
@@ -140,7 +142,8 @@ private boolean endpointWithIdentifierExists(Connection connection, String ident
 		Map<String, List<String>> queryParameters = Map.of("identifier",
 				Collections.singletonList(ENDPOINT_IDENTIFIER_SYSTEM + "|" + identifierValue));
 		EndpointDao dao = getDao();
-		SearchQuery<Endpoint> query = dao.createSearchQueryWithoutUserFilter(0, 0).configureParameters(queryParameters);
+		SearchQuery<Endpoint> query = dao.createSearchQueryWithoutUserFilter(PageAndCount.exists())
+				.configureParameters(queryParameters);
 
 		List<SearchQueryParameterError> uQp = query.getUnsupportedQueryParameters();
 		if (!uQp.isEmpty())

dsf-fhir/dsf-fhir-server/src/main/java/dev/dsf/fhir/authorization/OrganizationAffiliationAuthorizationRule.java

@@ -23,6 +23,7 @@
 import dev.dsf.fhir.dao.OrganizationAffiliationDao;
 import dev.dsf.fhir.dao.provider.DaoProvider;
 import dev.dsf.fhir.help.ParameterConverter;
+import dev.dsf.fhir.search.PageAndCount;
 import dev.dsf.fhir.search.PartialResult;
 import dev.dsf.fhir.search.SearchQuery;
 import dev.dsf.fhir.search.SearchQueryParameterError;
@@ -154,7 +155,7 @@ private Map<String, List<String>> queryParameters(OrganizationAffiliation newRes
 	private boolean organizationAffiliationExists(Connection connection, Map<String, List<String>> queryParameters)
 	{
 		OrganizationAffiliationDao dao = getDao();
-		SearchQuery<OrganizationAffiliation> query = dao.createSearchQueryWithoutUserFilter(0, 0)
+		SearchQuery<OrganizationAffiliation> query = dao.createSearchQueryWithoutUserFilter(PageAndCount.exists())
 				.configureParameters(queryParameters);
 
 		List<SearchQueryParameterError> uQp = query.getUnsupportedQueryParameters();

dsf-fhir/dsf-fhir-server/src/main/java/dev/dsf/fhir/authorization/SubscriptionAuthorizationRule.java

@@ -24,6 +24,7 @@
 import dev.dsf.fhir.dao.SubscriptionDao;
 import dev.dsf.fhir.dao.provider.DaoProvider;
 import dev.dsf.fhir.help.ParameterConverter;
+import dev.dsf.fhir.search.PageAndCount;
 import dev.dsf.fhir.search.PartialResult;
 import dev.dsf.fhir.search.SearchQuery;
 import dev.dsf.fhir.search.SearchQueryParameterError;
@@ -87,7 +88,8 @@ private Optional<String> newResourceOk(Connection connection, Subscription newRe
 				Optional<ResourceDao<?>> optDao = daoProvider.getDao(cComponentes.getPathSegments().get(0));
 				if (optDao.isPresent())
 				{
-					SearchQuery<?> searchQuery = optDao.get().createSearchQueryWithoutUserFilter(1, 1);
+					SearchQuery<?> searchQuery = optDao.get().createSearchQueryWithoutUserFilter(PageAndCount.exists())
+							.configureParameters(cComponentes.getQueryParams());
 					List<SearchQueryParameterError> uQp = searchQuery.getUnsupportedQueryParameters();
 					if (!uQp.isEmpty())
 					{
@@ -131,7 +133,7 @@ protected boolean resourceExists(Connection connection, Subscription newResource
 				Collections.singletonList(newResource.getChannel().getType().toCode()), "payload",
 				Collections.singletonList(newResource.getChannel().getPayload()));
 		SubscriptionDao dao = getDao();
-		SearchQuery<Subscription> query = dao.createSearchQueryWithoutUserFilter(1, 1)
+		SearchQuery<Subscription> query = dao.createSearchQueryWithoutUserFilter(PageAndCount.exists())
 				.configureParameters(queryParameters);
 
 		List<SearchQueryParameterError> uQp = query.getUnsupportedQueryParameters();

dsf-fhir/dsf-fhir-server/src/main/java/dev/dsf/fhir/dao/ResourceDao.java

@@ -14,6 +14,7 @@
 import dev.dsf.fhir.dao.exception.ResourceNotMarkedDeletedException;
 import dev.dsf.fhir.dao.exception.ResourceVersionNoMatchException;
 import dev.dsf.fhir.search.DbSearchQuery;
+import dev.dsf.fhir.search.PageAndCount;
 import dev.dsf.fhir.search.PartialResult;
 import dev.dsf.fhir.search.SearchQuery;
 
@@ -355,9 +356,21 @@ R updateWithTransaction(Connection connection, R resource, Long expectedVersion)
 	 */
 	PartialResult<R> searchWithTransaction(Connection connection, DbSearchQuery query) throws SQLException;
 
-	SearchQuery<R> createSearchQuery(Identity identity, int page, int count);
+	/**
+	 * @param identity
+	 *            not <code>null</code>
+	 * @param pageAndCount
+	 *            not <code>null</code>
+	 * @return query
+	 */
+	SearchQuery<R> createSearchQuery(Identity identity, PageAndCount pageAndCount);
 
-	SearchQuery<R> createSearchQueryWithoutUserFilter(int page, int count);
+	/**
+	 * @param pageAndCount
+	 *            not <code>null</code>
+	 * @return query
+	 */
+	SearchQuery<R> createSearchQueryWithoutUserFilter(PageAndCount pageAndCount);
 
 	/**
 	 * Permanently delete a resource that was previously marked as deleted.

dsf-fhir/dsf-fhir-server/src/main/java/dev/dsf/fhir/dao/command/CreateCommand.java

@@ -33,6 +33,7 @@
 import dev.dsf.fhir.help.ParameterConverter;
 import dev.dsf.fhir.help.ResponseGenerator;
 import dev.dsf.fhir.prefer.PreferReturnType;
+import dev.dsf.fhir.search.PageAndCount;
 import dev.dsf.fhir.search.PartialResult;
 import dev.dsf.fhir.search.SearchQuery;
 import dev.dsf.fhir.search.SearchQueryParameterError;
@@ -199,7 +200,7 @@ private Optional<Resource> checkAlreadyExists(Connection connection, String ifNo
 					.collect(Collectors.toMap(Entry::getKey, Entry::getValue));
 		}
 
-		SearchQuery<R> query = dao.createSearchQueryWithoutUserFilter(1, 1);
+		SearchQuery<R> query = dao.createSearchQueryWithoutUserFilter(PageAndCount.single());
 		query.configureParameters(queryParameters);
 
 		List<SearchQueryParameterError> unsupportedQueryParameters = query.getUnsupportedQueryParameters();

dsf-fhir/dsf-fhir-server/src/main/java/dev/dsf/fhir/dao/command/DeleteCommand.java

@@ -31,6 +31,7 @@
 import dev.dsf.fhir.help.ParameterConverter;
 import dev.dsf.fhir.help.ResponseGenerator;
 import dev.dsf.fhir.prefer.PreferReturnType;
+import dev.dsf.fhir.search.PageAndCount;
 import dev.dsf.fhir.search.PartialResult;
 import dev.dsf.fhir.search.SearchQuery;
 import dev.dsf.fhir.search.SearchQueryParameterError;
@@ -172,7 +173,7 @@ private Optional<Resource> search(Connection connection, ResourceDao<?> dao,
 					.collect(Collectors.toMap(Entry::getKey, Entry::getValue));
 		}
 
-		SearchQuery<?> query = dao.createSearchQueryWithoutUserFilter(1, 1);
+		SearchQuery<?> query = dao.createSearchQueryWithoutUserFilter(PageAndCount.single());
 		query.configureParameters(queryParameters);
 
 		List<SearchQueryParameterError> unsupportedQueryParameters = query.getUnsupportedQueryParameters();

dsf-fhir/dsf-fhir-server/src/main/java/dev/dsf/fhir/dao/command/ReadCommand.java

@@ -30,6 +30,7 @@
 import dev.dsf.fhir.help.ResponseGenerator;
 import dev.dsf.fhir.prefer.PreferHandlingType;
 import dev.dsf.fhir.prefer.PreferReturnType;
+import dev.dsf.fhir.search.PageAndCount;
 import dev.dsf.fhir.search.PartialResult;
 import dev.dsf.fhir.search.SearchQuery;
 import dev.dsf.fhir.search.SearchQueryParameterError;
@@ -193,14 +194,8 @@ private void readByCondition(Connection connection, String resourceTypeName,
 			responseResult = Response.status(Status.NOT_FOUND).build();
 		else
 		{
-			Integer page = parameterConverter.getFirstInt(cleanQueryParameters, SearchQuery.PARAMETER_PAGE);
-			int effectivePage = page == null ? 1 : page;
-
-			Integer count = parameterConverter.getFirstInt(cleanQueryParameters, SearchQuery.PARAMETER_COUNT);
-			int effectiveCount = (count == null || count < 0) ? defaultPageCount : count;
-
-			SearchQuery<? extends Resource> query = optDao.get().createSearchQuery(identity, effectivePage,
-					effectiveCount);
+			SearchQuery<? extends Resource> query = optDao.get().createSearchQuery(identity,
+					PageAndCount.from(cleanQueryParameters, defaultPageCount));
 			query.configureParameters(cleanQueryParameters);
 			List<SearchQueryParameterError> errors = query.getUnsupportedQueryParameters();
 

dsf-fhir/dsf-fhir-server/src/main/java/dev/dsf/fhir/dao/command/UpdateCommand.java

@@ -35,6 +35,7 @@
 import dev.dsf.fhir.help.ParameterConverter;
 import dev.dsf.fhir.help.ResponseGenerator;
 import dev.dsf.fhir.prefer.PreferReturnType;
+import dev.dsf.fhir.search.PageAndCount;
 import dev.dsf.fhir.search.PartialResult;
 import dev.dsf.fhir.search.SearchQuery;
 import dev.dsf.fhir.search.SearchQueryParameterError;
@@ -151,7 +152,7 @@ private boolean addMissingIdToTranslationTableAndCheckConditionFindsResource(Map
 					.collect(Collectors.toMap(Entry::getKey, Entry::getValue));
 		}
 
-		SearchQuery<R> query = dao.createSearchQueryWithoutUserFilter(1, 1);
+		SearchQuery<R> query = dao.createSearchQueryWithoutUserFilter(PageAndCount.single());
 		query.configureParameters(queryParameters);
 
 		List<SearchQueryParameterError> unsupportedParams = query.getUnsupportedQueryParameters();

dsf-fhir/dsf-fhir-server/src/main/java/dev/dsf/fhir/dao/jdbc/AbstractResourceDaoJdbc.java

@@ -40,6 +40,7 @@
 import dev.dsf.fhir.dao.exception.ResourceNotMarkedDeletedException;
 import dev.dsf.fhir.dao.exception.ResourceVersionNoMatchException;
 import dev.dsf.fhir.search.DbSearchQuery;
+import dev.dsf.fhir.search.PageAndCount;
 import dev.dsf.fhir.search.PartialResult;
 import dev.dsf.fhir.search.SearchQuery;
 import dev.dsf.fhir.search.SearchQuery.SearchQueryBuilder;
@@ -898,20 +899,24 @@ private void getResources(ResultSet result, int columnIndex, List<? super Resour
 	}
 
 	@Override
-	public final SearchQuery<R> createSearchQuery(Identity identity, int page, int count)
+	public final SearchQuery<R> createSearchQuery(Identity identity, PageAndCount pageAndCount)
 	{
-		return doCreateSearchQuery(identity, page, count);
+		Objects.requireNonNull(identity, "identity");
+
+		return doCreateSearchQuery(identity, pageAndCount);
 	}
 
 	@Override
-	public SearchQuery<R> createSearchQueryWithoutUserFilter(int page, int count)
+	public SearchQuery<R> createSearchQueryWithoutUserFilter(PageAndCount pageAndCount)
 	{
-		return doCreateSearchQuery(null, page, count);
+		return doCreateSearchQuery(null, pageAndCount);
 	}
 
-	private SearchQuery<R> doCreateSearchQuery(Identity identity, int page, int count)
+	private SearchQuery<R> doCreateSearchQuery(Identity identity, PageAndCount pageAndCount)
 	{
-		var builder = SearchQueryBuilder.create(resourceType, getResourceTable(), getResourceColumn(), page, count);
+		Objects.requireNonNull(pageAndCount, "pageAndCount");
+
+		var builder = SearchQueryBuilder.create(resourceType, getResourceTable(), getResourceColumn(), pageAndCount);
 
 		if (identity != null)
 			builder = builder.with(identityFilter.apply(identity));

dsf-fhir/dsf-fhir-server/src/main/java/dev/dsf/fhir/help/ResponseGenerator.java

@@ -186,8 +186,7 @@ public Bundle createSearchSet(PartialResult<? extends Resource> result, List<Sea
 
 		bundle.setTotal(result.getTotal());
 
-		setLinks(result.getPageAndCount(), bundleUri, format, pretty, summaryMode, bundle,
-				result.getPartialResult().isEmpty(), result.getTotal());
+		setLinks(result.getPageAndCount(), bundleUri, format, pretty, summaryMode, bundle, result.getTotal());
 
 		return bundle;
 	}
@@ -217,8 +216,7 @@ public Bundle createHistoryBundle(History history, List<SearchQueryParameterErro
 
 		bundle.setTotal(history.getTotal());
 
-		setLinks(history.getPageAndCount(), bundleUri, format, pretty, summaryMode, bundle,
-				history.getEntries().isEmpty(), history.getTotal());
+		setLinks(history.getPageAndCount(), bundleUri, format, pretty, summaryMode, bundle, history.getTotal());
 
 		return bundle;
 	}
@@ -262,7 +260,7 @@ private String toLocation(String resourceType, String id, String version)
 	}
 
 	private void setLinks(PageAndCount pageAndCount, UriBuilder bundleUri, String format, String pretty,
-			SummaryMode summaryMode, Bundle bundle, boolean isEmpty, int total)
+			SummaryMode summaryMode, Bundle bundle, int total)
 	{
 		if (format != null)
 			bundleUri = bundleUri.replaceQueryParam("_format", format);
@@ -271,17 +269,18 @@ private void setLinks(PageAndCount pageAndCount, UriBuilder bundleUri, String fo
 		if (summaryMode != null)
 			bundleUri = bundleUri.replaceQueryParam("_summary", summaryMode.toString());
 
-		if (pageAndCount.getCount() > 0)
+		boolean countOnly = pageAndCount.isCountOnly(total);
+		if (!countOnly)
 		{
 			bundleUri = bundleUri.replaceQueryParam("_count", pageAndCount.getCount());
-			bundleUri = bundleUri.replaceQueryParam("_page", isEmpty ? 1 : pageAndCount.getPage());
+			bundleUri = bundleUri.replaceQueryParam("_page", pageAndCount.getPage());
 		}
 		else
 			bundleUri = bundleUri.replaceQueryParam("_count", "0");
 
 		bundle.addLink().setRelation("self").setUrlElement(new UriType(bundleUri.build()));
 
-		if (pageAndCount.getCount() > 0 && !isEmpty)
+		if (!countOnly && pageAndCount.getCount() > 0)
 		{
 			bundleUri = bundleUri.replaceQueryParam("_page", 1);
 			bundleUri = bundleUri.replaceQueryParam("_count", pageAndCount.getCount());

dsf-fhir/dsf-fhir-server/src/main/java/dev/dsf/fhir/history/HistoryServiceImpl.java

@@ -87,13 +87,7 @@ public Bundle getHistory(Identity identity, UriInfo uri, HttpHeaders headers,
 	{
 		MultivaluedMap<String, String> queryParameters = uri.getQueryParameters();
 
-		Integer page = parameterConverter.getFirstInt(queryParameters, SearchQuery.PARAMETER_PAGE);
-		int effectivePage = page == null ? 1 : page;
-
-		Integer count = parameterConverter.getFirstInt(queryParameters, SearchQuery.PARAMETER_COUNT);
-		int effectiveCount = count == null || count < 0 ? defaultPageCount : count;
-
-		PageAndCount pageAndCount = new PageAndCount(effectivePage, effectiveCount);
+		PageAndCount pageAndCount = PageAndCount.from(uri.getQueryParameters(), defaultPageCount);
 
 		List<AtParameter> atParameters = new ArrayList<>();
 		SinceParameter sinceParameter = new SinceParameter();