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[xgb] Fix xgb intern to close replaced array #3558

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Original file line number Diff line number Diff line change
Expand Up @@ -88,14 +88,36 @@ public ByteBuffer toByteBuffer(boolean tryDirect) {
/** {@inheritDoc} */
@Override
public void intern(NDArray replaced) {
if (handle != null && handle.get() != 0L) {
long pointer = handle.getAndSet(0L);
JniUtils.deleteDMatrix(pointer);
if (replaced == null) {
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This is not necessary, the instanceof will check null:

if (!(replaced instanceof XgbNDArray))

throw new IllegalArgumentException("The replaced NDArray cannot be null.");
}
if (!(replaced instanceof XgbNDArray)) {
throw new IllegalArgumentException(
"The replaced NDArray must be an instance of XgbNDArray.");
}
XgbNDArray array = (XgbNDArray) replaced;
data = array.data;
handle = array.handle;
format = array.format;

synchronized (this) {
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NDArray operation is not thread-safe. Adding synchronized here won't improve thread-safty

if (handle != null && handle.get() != 0L) {
long pointer = handle.getAndSet(0L);
JniUtils.deleteDMatrix(pointer);
}

data = array.data;
format = array.format;

if (array.handle != null && array.handle.get() != 0L) {
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Not sure about this null check, if we want to prevent a closed NDArray, we should just do:

if (this.closed()

if (handle == null) {
handle = new AtomicLong();
}
handle.set(array.handle.getAndSet(0L));
}
}

array.data = null;
array.handle = null;
array.format = null;
array.close();
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The memory leak issue may caused by alternativeArray leak, I think we should close current array's alternative array as will. The code can be re-implemented as the following:

        if (!(replaced instanceof XgbNDArray)) {
            throw new IllegalArgumentException(
                    "The replaced NDArray must be an instance of XgbNDArray.");
        }
        XgbNDArray array = (XgbNDArray) replaced;
        if (isReleased()) {
            throw new IllegalArgumentException("This array is already closed");
        }
        if (replaced.isReleased()) {
            throw new IllegalArgumentException("This target array is already closed");
        }

        long pointer = handle.getAndSet(0L);
        JniUtils.deleteDMatrix(pointer);
        if (alternativeArray != null) {
            alternativeArray.close();
        }

        data = array.data;
        handle = array.handle;
        format = array.format;
        alternativeArray = array.alternativeArray;
        array.handle = null;
        array.alternativeArray = null;
        array.close();

}

/** {@inheritDoc} */
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