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major refactor of select_mock_targets #264

Merged
merged 120 commits into from
Feb 27, 2018
Merged

major refactor of select_mock_targets #264

merged 120 commits into from
Feb 27, 2018

Commits on Oct 10, 2017

  1. start refactor

    @moustakas
    moustakas committed Oct 10, 2017
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Commits on Dec 21, 2017

  1. fixed spectra conflict

    @moustakas
    moustakas committed Dec 21, 2017
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  2. deprecate realtargets optional input

    @moustakas
    moustakas committed Dec 21, 2017
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  3. use initialize function in targets_truth

    @moustakas
    moustakas committed Dec 21, 2017
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  4. use read_catalog

    @moustakas
    moustakas committed Dec 21, 2017
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  5. compute MW_TRANSMISSION for all mock targets

    @moustakas
    moustakas committed Dec 21, 2017
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Commits on Dec 22, 2017

  1. assume uniform depth model

    @moustakas
    moustakas committed Dec 22, 2017
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  2. add units to targets, truth tables

    @moustakas
    moustakas committed Dec 22, 2017
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  3. starting including fluctuations

    @moustakas
    moustakas committed Dec 22, 2017
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  4. remove obsolete shapes_and_fluxes function

    @moustakas
    moustakas committed Dec 22, 2017
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  5. minor tweaks to QA.density_fluctuations

    @moustakas
    moustakas committed Dec 22, 2017
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  6. chunk into smaller healpixels

    @moustakas
    moustakas committed Dec 22, 2017
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  7. first version of iterative code working

    @moustakas
    moustakas committed Dec 22, 2017
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  8. move obsolete BrickInfo to new brickinfo.py

    @moustakas
    moustakas committed Dec 22, 2017
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  9. remove obsolete fileid_filename

    @moustakas
    moustakas committed Dec 22, 2017
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  10. remove obsolete get_spectra_onebrick

    @moustakas
    moustakas committed Dec 22, 2017
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  11. major cleanup/reorganization of mock.build

    @moustakas
    moustakas committed Dec 22, 2017
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Commits on Dec 23, 2017

  1. properly assign brickid and objid

    @moustakas
    moustakas committed Dec 23, 2017
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  2. add overwrite option to select_mock_targets

    @moustakas
    moustakas committed Dec 23, 2017
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  3. fix skies

    @moustakas
    moustakas committed Dec 23, 2017
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  4. scatter photo in own function

    @moustakas
    moustakas committed Dec 23, 2017
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  5. more logging

    @moustakas
    moustakas committed Dec 23, 2017
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  6. cleanup

    @moustakas
    moustakas committed Dec 23, 2017
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Commits on Dec 24, 2017

  1. deal with (numerous) faint stars [ci skip]

    @moustakas
    moustakas committed Dec 24, 2017
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  2. skip deprecated unit tests

    @moustakas
    moustakas committed Dec 24, 2017
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Commits on Dec 30, 2017

  1. use simqso for qso templates

    @moustakas
    moustakas committed Dec 30, 2017
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  2. use healpix for brickid

    @moustakas
    moustakas committed Dec 30, 2017
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Commits on Dec 31, 2017

  1. make the html output directory

    @moustakas
    moustakas committed Dec 31, 2017
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  2. include contaminants in goal QSO density

    @moustakas
    moustakas committed Dec 31, 2017
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  3. start iospectra module

    @moustakas
    moustakas committed Dec 31, 2017
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  4. move initialize_no_spectra to its own method

    @moustakas
    moustakas committed Dec 31, 2017
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Commits on Jan 1, 2018

  1. use iospectra methods in targets_truth

    @moustakas
    moustakas committed Jan 1, 2018
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  2. rename iospectra mockmaker

    @moustakas
    moustakas committed Jan 1, 2018
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  3. QSOs and SKY working

    @moustakas
    moustakas committed Jan 1, 2018
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  4. add LRGs and vdisp sampling

    @moustakas
    moustakas committed Jan 1, 2018
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  5. add GMM

    @moustakas
    moustakas committed Jan 1, 2018
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  6. fix bug in depth computation

    @moustakas
    moustakas committed Jan 1, 2018
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  7. more in mockmaker

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    moustakas committed Jan 1, 2018
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Commits on Jan 2, 2018

  1. add WDs

    @moustakas
    moustakas committed Jan 2, 2018
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  2. consolidate some of the mockmaker classes

    @moustakas
    moustakas committed Jan 2, 2018
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  3. add nearby stars

    @moustakas
    moustakas committed Jan 2, 2018
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  4. Lya skewers done

    @moustakas
    moustakas committed Jan 2, 2018
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  5. support new galaxia mocks

    @moustakas
    moustakas committed Jan 2, 2018
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  6. select boss standards

    @moustakas
    moustakas committed Jan 2, 2018
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  7. start adding contaminants

    @moustakas
    moustakas committed Jan 2, 2018
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  8. populate targets, truth in mockmaker

    @moustakas
    moustakas committed Jan 2, 2018
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Commits on Jan 3, 2018

  1. major speedup of faintstar targets

    @moustakas
    moustakas committed Jan 3, 2018
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  2. less verbose [ci skip]

    @moustakas
    moustakas committed Jan 3, 2018
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  3. move the nominal depth to mockmaker

    @moustakas
    moustakas committed Jan 3, 2018
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  4. a bit more cleanup

    @moustakas
    moustakas committed Jan 3, 2018
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Commits on Jan 11, 2018

  1. read both file prefixes in faintstar mocks

    @moustakas
    moustakas committed Jan 11, 2018
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Commits on Jan 14, 2018

  1. read GaussianField reader

    @moustakas
    moustakas committed Jan 14, 2018
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  2. start documentation and exampls notebook

    @moustakas
    moustakas committed Jan 14, 2018
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Commits on Jan 15, 2018

  1. more documentation

    @moustakas
    moustakas committed Jan 15, 2018
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Commits on Jan 16, 2018

  1. done with mockmaker documentation

    @moustakas
    moustakas committed Jan 16, 2018
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Commits on Jan 18, 2018

  1. finish examples notebook

    @moustakas
    moustakas committed Jan 18, 2018
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Commits on Jan 19, 2018

  1. Merge branch 'master' into fix-densities

    @moustakas
    moustakas committed Jan 19, 2018
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  2. start adding fluctuations model

    @moustakas
    moustakas committed Jan 19, 2018
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Commits on Jan 20, 2018

  1. works...i think

    @moustakas
    moustakas committed Jan 20, 2018
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  2. start moving (obsolete) quicksurvey code to dedicated module

    @moustakas
    moustakas committed Jan 20, 2018
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  3. more cleanup

    @moustakas
    moustakas committed Jan 20, 2018
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Commits on Jan 23, 2018

  1. remove mock/spectra and mock/selection

    @moustakas
    moustakas committed Jan 23, 2018
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  2. remove mock/QA, mock/brickinfo, mock/sample

    @moustakas
    moustakas committed Jan 23, 2018
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  3. cleanup mock.io

    @moustakas
    moustakas committed Jan 23, 2018
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  4. merged new QA code

    @moustakas
    moustakas committed Jan 23, 2018
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  5. update api.rst

    @moustakas
    moustakas committed Jan 23, 2018
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  6. remove obsconditions (see #253)

    @moustakas
    moustakas committed Jan 23, 2018
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  7. restore sample.py

    @moustakas
    moustakas committed Jan 23, 2018
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  8. only load targets_truth_no_spectra when needed

    @moustakas
    moustakas committed Jan 23, 2018
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  9. update changes.rst [ci skip]

    @moustakas
    moustakas committed Jan 23, 2018
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  10. Merge branch 'fix-densities' of https://github.com/desihub/desitarget … 

    …into fix-densities
    @moustakas
    moustakas committed Jan 23, 2018
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Commits on Feb 7, 2018

  1. fix mxxl directory typo

    @moustakas
    moustakas committed Feb 7, 2018
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  2. capture nside_galaxia undefined error

    @moustakas
    moustakas committed Feb 7, 2018
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  3. require nside input

    @moustakas
    moustakas committed Feb 7, 2018
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  4. make NSIDE a required input

    @moustakas
    moustakas committed Feb 7, 2018
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Commits on Feb 8, 2018

  1. more error messages

    @moustakas
    moustakas committed Feb 8, 2018
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Commits on Feb 11, 2018

  1. add uniformsky class reader

    @moustakas
    moustakas committed Feb 11, 2018
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  2. update input.yaml configuration file

    @moustakas
    moustakas committed Feb 11, 2018
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  3. add QA sky method to SelectTargets

    @moustakas
    moustakas committed Feb 11, 2018
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Commits on Feb 12, 2018

  1. use updated LRG mocks (#263)

    @moustakas
    moustakas committed Feb 12, 2018
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Commits on Feb 23, 2018

  1. resolve conflicts

    @moustakas
    moustakas committed Feb 23, 2018
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  2. use partial pixel weights and encode_targetid for mockid

    @moustakas
    moustakas committed Feb 23, 2018
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  3. sandbox notebook for testing

    @moustakas
    moustakas committed Feb 23, 2018
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  4. read the HDF5 file in read-only mode

    @moustakas
    moustakas committed Feb 23, 2018
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  5. incorporate #278 logging changes

    @moustakas
    moustakas committed Feb 23, 2018
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Commits on Feb 24, 2018

  1. start fluctuations refactor

    @moustakas
    moustakas committed Feb 24, 2018
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  2. add mock_density method to ReadGaussianField class

    @moustakas
    moustakas committed Feb 24, 2018
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  3. downsampling QSOs almost there

    @moustakas
    moustakas committed Feb 24, 2018
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  4. iterate until we reach the desired target density

    @moustakas
    moustakas committed Feb 24, 2018
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  5. a little cleanup

    @moustakas
    moustakas committed Feb 24, 2018
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  6. resolved conflicts

    @moustakas
    moustakas committed Feb 24, 2018
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  7. documentation

    @moustakas
    moustakas committed Feb 24, 2018
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  8. QSOs are working

    @moustakas
    moustakas committed Feb 24, 2018
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Commits on Feb 25, 2018

  1. speed up BGS mock read method

    @moustakas
    moustakas committed Feb 25, 2018
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  2. do not iterate if density is not provided

    @moustakas
    moustakas committed Feb 25, 2018
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  3. clean up normfilter

    @moustakas
    moustakas committed Feb 25, 2018
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  4. bgs, qso, and lrg in ok shape

    @moustakas
    moustakas committed Feb 25, 2018
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  5. ELGs

    @moustakas
    moustakas committed Feb 25, 2018
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  6. skies are done; density_factor must be <=1

    @moustakas
    moustakas committed Feb 25, 2018
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  7. mws_nearby is done

    @moustakas
    moustakas committed Feb 25, 2018
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Commits on Feb 26, 2018

  1. WDs and mws_main done

    @moustakas
    moustakas committed Feb 26, 2018
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  2. take the mock sky density as-is (see #280)

    @moustakas
    moustakas committed Feb 26, 2018
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  3. documentation cleanup

    @moustakas
    moustakas committed Feb 26, 2018
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  4. update qso photometry *after* Lya forest has been applied

    @moustakas
    moustakas committed Feb 26, 2018
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  5. clean up documentation in build.py

    @moustakas
    moustakas committed Feb 26, 2018
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  6. more useful maxiter warning message

    @moustakas
    moustakas committed Feb 26, 2018
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Commits on Feb 27, 2018

  1. attenuate fluxes for Galactic extinction

    @moustakas
    moustakas committed Feb 27, 2018
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  2. correct for extinction before selecting targets

    @moustakas
    moustakas committed Feb 27, 2018
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  3. start updating notebook

    @moustakas
    moustakas committed Feb 27, 2018
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  4. Merge branch 'master' into fix-densities

    @moustakas
    moustakas committed Feb 27, 2018
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  5. remove obsolete twopercent-sprint-qa notebook

    @moustakas
    moustakas committed Feb 27, 2018
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  6. remove obsolete mock-density-qa notebook

    @moustakas
    moustakas committed Feb 27, 2018
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  7. a bit more cleanup

    @moustakas
    moustakas committed Feb 27, 2018
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  8. workaround hdf5 bug on NERSC /project

    Stephen Bailey authored and Stephen Bailey committed Feb 27, 2018
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  9. Merge branch 'fix-densities' of https://github.com/desihub/desitarget … 

    …into fix-densities
    Stephen Bailey authored and Stephen Bailey committed Feb 27, 2018
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  10. fix bug when selecting faintstar contaminants

    @moustakas
    moustakas committed Feb 27, 2018
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  11. update connecting-spectra-to-mocks notebook

    @moustakas
    moustakas committed Feb 27, 2018
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  12. update changes.rst

    @moustakas
    moustakas committed Feb 27, 2018
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  13. a few masks moved location

    Stephen Bailey authored and Stephen Bailey committed Feb 27, 2018
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  14. update travis dep versions and cpu time units

    Stephen Bailey authored and Stephen Bailey committed Feb 27, 2018
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