Skip to content

Commit

Permalink
htdocs update (master)
Browse files Browse the repository at this point in the history
  • Loading branch information
@DiamondLightSource-build-server
DiamondLightSource-build-server committed Dec 8, 2024
1 parent 2379efd commit 4aa3395
Show file tree
Hide file tree
Showing 3 changed files with 40 additions and 40 deletions.
40 changes: 20 additions & 20 deletions documentation/tutorials/mpro_x0692.html
View file
Original file line number Diff line number Diff line change
Expand Up @@ -1379,7 +1379,7 @@ <h3>Bravais Lattice Refinement<a class="headerlink" href="#bravais-lattice-refin
<span class="linenos">12</span>}
<span class="linenos">13</span>
<span class="linenos">14</span>Configuring refiner
<span class="linenos">15</span>Setting outlier.nproc=72
<span class="linenos">15</span>Setting outlier.nproc=32
<span class="linenos">16</span>
<span class="linenos">17</span>Summary statistics for 20973 observations matched to predictions:
<span class="linenos">18</span>+-------------------+---------+----------+-----------+---------+--------+
Expand Down Expand Up @@ -1488,7 +1488,7 @@ <h3>Bravais Lattice Refinement<a class="headerlink" href="#bravais-lattice-refin
<span class="linenos">12</span>}
<span class="linenos">13</span>
<span class="linenos">14</span>Configuring refiner
<span class="linenos">15</span>Setting outlier.nproc=72
<span class="linenos">15</span>Setting outlier.nproc=32
<span class="linenos">16</span>
<span class="linenos">17</span>Summary statistics for 20972 observations matched to predictions:
<span class="linenos">18</span>+-------------------+---------+----------+-----------+---------+-------+
Expand Down Expand Up @@ -1724,8 +1724,8 @@ <h3>Integration<a class="headerlink" href="#integration" title="Link to this hea
<span class="linenos"> 123</span> Split 27 reflections overlapping job boundaries
<span class="linenos"> 124</span>
<span class="linenos"> 125</span>Memory situation report:
<span class="linenos"> 126</span> Available system memory : 134.6 GB
<span class="linenos"> 127</span> Maximum memory for processing : 121.1 GB
<span class="linenos"> 126</span> Available system memory : 201.2 GB
<span class="linenos"> 127</span> Maximum memory for processing : 181.1 GB
<span class="linenos"> 128</span> Memory required per process : 0.0 GB
<span class="linenos"> 129</span>
<span class="linenos"> 130</span>Processing reflections in the following blocks of images:
Expand Down Expand Up @@ -2149,12 +2149,12 @@ <h3>Integration<a class="headerlink" href="#integration" title="Link to this hea
<span class="linenos"> 548</span>
<span class="linenos"> 549</span>Timing information for reference profile formation
<span class="linenos"> 550</span>+-------------------+---------------+
<span class="linenos"> 551</span>| Read time | 20.03 seconds |
<span class="linenos"> 552</span>| Extract time | 0.45 seconds |
<span class="linenos"> 551</span>| Read time | 15.13 seconds |
<span class="linenos"> 552</span>| Extract time | 0.42 seconds |
<span class="linenos"> 553</span>| Pre-process time | 0.02 seconds |
<span class="linenos"> 554</span>| Process time | 10.05 seconds |
<span class="linenos"> 554</span>| Process time | 9.18 seconds |
<span class="linenos"> 555</span>| Post-process time | 0.00 seconds |
<span class="linenos"> 556</span>| Total time | 30.59 seconds |
<span class="linenos"> 556</span>| Total time | 24.75 seconds |
<span class="linenos"> 557</span>+-------------------+---------------+
<span class="linenos"> 558</span>
<span class="linenos"> 559</span>================================================================================
Expand All @@ -2164,8 +2164,8 @@ <h3>Integration<a class="headerlink" href="#integration" title="Link to this hea
<span class="linenos"> 563</span> Split 681 reflections overlapping job boundaries
<span class="linenos"> 564</span>
<span class="linenos"> 565</span>Memory situation report:
<span class="linenos"> 566</span> Available system memory : 134.6 GB
<span class="linenos"> 567</span> Maximum memory for processing : 121.1 GB
<span class="linenos"> 566</span> Available system memory : 201.2 GB
<span class="linenos"> 567</span> Maximum memory for processing : 181.1 GB
<span class="linenos"> 568</span> Memory required per process : 0.3 GB
<span class="linenos"> 569</span>
<span class="linenos"> 570</span>Processing reflections in the following blocks of images:
Expand Down Expand Up @@ -2685,12 +2685,12 @@ <h3>Integration<a class="headerlink" href="#integration" title="Link to this hea
<span class="linenos">1084</span>
<span class="linenos">1085</span>Timing information for integration
<span class="linenos">1086</span>+-------------------+----------------+
<span class="linenos">1087</span>| Read time | 23.55 seconds |
<span class="linenos">1088</span>| Extract time | 6.65 seconds |
<span class="linenos">1089</span>| Pre-process time | 0.28 seconds |
<span class="linenos">1090</span>| Process time | 147.38 seconds |
<span class="linenos">1087</span>| Read time | 16.15 seconds |
<span class="linenos">1088</span>| Extract time | 5.91 seconds |
<span class="linenos">1089</span>| Pre-process time | 0.25 seconds |
<span class="linenos">1090</span>| Process time | 135.89 seconds |
<span class="linenos">1091</span>| Post-process time | 0.00 seconds |
<span class="linenos">1092</span>| Total time | 178.90 seconds |
<span class="linenos">1092</span>| Total time | 159.15 seconds |
<span class="linenos">1093</span>+-------------------+----------------+
<span class="linenos">1094</span>
<span class="linenos">1095</span>Removing 22837 unintegrated reflections of 199395 total
Expand Down Expand Up @@ -2983,7 +2983,7 @@ <h3>Scaling and Merging<a class="headerlink" href="#scaling-and-merging" title="
<span class="linenos"> 67</span>Components to be refined in this cycle for all datasets: scale, decay, absorption
<span class="linenos"> 68</span>Performing a round of scaling with an LBFGS minimizer.
<span class="linenos"> 69</span>
<span class="linenos"> 70</span>Time taken for refinement 7.19
<span class="linenos"> 70</span>Time taken for refinement 6.99
<span class="linenos"> 71</span>
<span class="linenos"> 72</span>Refinement steps:
<span class="linenos"> 73</span>+--------+--------+----------+
Expand Down Expand Up @@ -3062,7 +3062,7 @@ <h3>Scaling and Merging<a class="headerlink" href="#scaling-and-merging" title="
<span class="linenos">146</span>Components to be refined in this cycle for all datasets: scale, decay, absorption
<span class="linenos">147</span>Performing a round of scaling with an LBFGS minimizer.
<span class="linenos">148</span>
<span class="linenos">149</span>Time taken for refinement 3.16
<span class="linenos">149</span>Time taken for refinement 3.05
<span class="linenos">150</span>
<span class="linenos">151</span>Refinement steps:
<span class="linenos">152</span>+--------+--------+----------+
Expand Down Expand Up @@ -3125,7 +3125,7 @@ <h3>Scaling and Merging<a class="headerlink" href="#scaling-and-merging" title="
<span class="linenos">209</span>Components to be refined in this cycle for all datasets: scale, decay, absorption
<span class="linenos">210</span>Performing a round of scaling with a Levenberg-Marquardt minimizer.
<span class="linenos">211</span>
<span class="linenos">212</span>Time taken for refinement 4.42
<span class="linenos">212</span>Time taken for refinement 4.27
<span class="linenos">213</span>
<span class="linenos">214</span>Refinement steps:
<span class="linenos">215</span>+--------+--------+----------+
Expand All @@ -3149,7 +3149,7 @@ <h3>Scaling and Merging<a class="headerlink" href="#scaling-and-merging" title="
<span class="linenos">233</span>Components to be refined in this cycle for all datasets: scale, decay, absorption
<span class="linenos">234</span>Performing a round of scaling with a Levenberg-Marquardt minimizer.
<span class="linenos">235</span>
<span class="linenos">236</span>Time taken for refinement 0.91
<span class="linenos">236</span>Time taken for refinement 0.89
<span class="linenos">237</span>
<span class="linenos">238</span>Refinement steps:
<span class="linenos">239</span>+--------+--------+----------+
Expand Down Expand Up @@ -3199,7 +3199,7 @@ <h3>Scaling and Merging<a class="headerlink" href="#scaling-and-merging" title="
<span class="linenos">283</span>The reflection table variances have been adjusted to account for the
<span class="linenos">284</span>uncertainty in the scaling model
<span class="linenos">285</span>
<span class="linenos">286</span>Total time taken: 21.4935s
<span class="linenos">286</span>Total time taken: 20.5947s
<span class="linenos">287</span>
<span class="linenos">288</span>================================================================================
<span class="linenos">289</span>
Expand Down
38 changes: 19 additions & 19 deletions documentation/tutorials/processing_in_detail_betalactamase.html
View file
Original file line number Diff line number Diff line change
Expand Up @@ -1702,7 +1702,7 @@ <h3>Bravais Lattice Refinement<a class="headerlink" href="#bravais-lattice-refin
<span class="linenos"> 7</span>}
<span class="linenos"> 8</span>
<span class="linenos"> 9</span>Configuring refiner
<span class="linenos"> 10</span>Setting outlier.nproc=72
<span class="linenos"> 10</span>Setting outlier.nproc=32
<span class="linenos"> 11</span>
<span class="linenos"> 12</span>Summary statistics for 106891 observations matched to predictions:
<span class="linenos"> 13</span>+-------------------+--------+----------+------------+---------+--------+
Expand Down Expand Up @@ -2003,8 +2003,8 @@ <h3>Integration<a class="headerlink" href="#integration" title="Link to this hea
<span class="linenos"> 133</span> Split 13 reflections overlapping job boundaries
<span class="linenos"> 134</span>
<span class="linenos"> 135</span>Memory situation report:
<span class="linenos"> 136</span> Available system memory : 134.6 GB
<span class="linenos"> 137</span> Maximum memory for processing : 121.1 GB
<span class="linenos"> 136</span> Available system memory : 201.2 GB
<span class="linenos"> 137</span> Maximum memory for processing : 181.1 GB
<span class="linenos"> 138</span> Memory required per process : 0.0 GB
<span class="linenos"> 139</span>
<span class="linenos"> 140</span>Processing reflections in the following blocks of images:
Expand Down Expand Up @@ -2716,12 +2716,12 @@ <h3>Integration<a class="headerlink" href="#integration" title="Link to this hea
<span class="linenos"> 846</span>
<span class="linenos"> 847</span>Timing information for reference profile formation
<span class="linenos"> 848</span>+-------------------+---------------+
<span class="linenos"> 849</span>| Read time | 65.03 seconds |
<span class="linenos"> 850</span>| Extract time | 0.51 seconds |
<span class="linenos"> 849</span>| Read time | 60.43 seconds |
<span class="linenos"> 850</span>| Extract time | 0.73 seconds |
<span class="linenos"> 851</span>| Pre-process time | 0.11 seconds |
<span class="linenos"> 852</span>| Process time | 30.77 seconds |
<span class="linenos"> 852</span>| Process time | 29.18 seconds |
<span class="linenos"> 853</span>| Post-process time | 0.00 seconds |
<span class="linenos"> 854</span>| Total time | 96.53 seconds |
<span class="linenos"> 854</span>| Total time | 90.61 seconds |
<span class="linenos"> 855</span>+-------------------+---------------+
<span class="linenos"> 856</span>
<span class="linenos"> 857</span>================================================================================
Expand All @@ -2731,8 +2731,8 @@ <h3>Integration<a class="headerlink" href="#integration" title="Link to this hea
<span class="linenos"> 861</span> Split 109 reflections overlapping job boundaries
<span class="linenos"> 862</span>
<span class="linenos"> 863</span>Memory situation report:
<span class="linenos"> 864</span> Available system memory : 134.6 GB
<span class="linenos"> 865</span> Maximum memory for processing : 121.1 GB
<span class="linenos"> 864</span> Available system memory : 201.2 GB
<span class="linenos"> 865</span> Maximum memory for processing : 181.1 GB
<span class="linenos"> 866</span> Memory required per process : 0.0 GB
<span class="linenos"> 867</span>
<span class="linenos"> 868</span>Processing reflections in the following blocks of images:
Expand Down Expand Up @@ -3572,12 +3572,12 @@ <h3>Integration<a class="headerlink" href="#integration" title="Link to this hea
<span class="linenos">1702</span>
<span class="linenos">1703</span>Timing information for integration
<span class="linenos">1704</span>+-------------------+----------------+
<span class="linenos">1705</span>| Read time | 63.50 seconds |
<span class="linenos">1706</span>| Extract time | 2.88 seconds |
<span class="linenos">1707</span>| Pre-process time | 0.47 seconds |
<span class="linenos">1708</span>| Process time | 155.82 seconds |
<span class="linenos">1705</span>| Read time | 49.59 seconds |
<span class="linenos">1706</span>| Extract time | 2.42 seconds |
<span class="linenos">1707</span>| Pre-process time | 0.43 seconds |
<span class="linenos">1708</span>| Process time | 145.19 seconds |
<span class="linenos">1709</span>| Post-process time | 0.00 seconds |
<span class="linenos">1710</span>| Total time | 223.58 seconds |
<span class="linenos">1710</span>| Total time | 198.45 seconds |
<span class="linenos">1711</span>+-------------------+----------------+
<span class="linenos">1712</span>
<span class="linenos">1713</span>Removing 41622 unintegrated reflections of 368699 total
Expand Down Expand Up @@ -3870,7 +3870,7 @@ <h3>Scaling and Merging<a class="headerlink" href="#scaling-and-merging" title="
<span class="linenos"> 67</span>Components to be refined in this cycle for all datasets: scale, decay, absorption
<span class="linenos"> 68</span>Performing a round of scaling with an LBFGS minimizer.
<span class="linenos"> 69</span>
<span class="linenos"> 70</span>Time taken for refinement 3.63
<span class="linenos"> 70</span>Time taken for refinement 3.76
<span class="linenos"> 71</span>
<span class="linenos"> 72</span>Refinement steps:
<span class="linenos"> 73</span>+--------+--------+----------+
Expand Down Expand Up @@ -3928,7 +3928,7 @@ <h3>Scaling and Merging<a class="headerlink" href="#scaling-and-merging" title="
<span class="linenos">125</span>Components to be refined in this cycle for all datasets: scale, decay, absorption
<span class="linenos">126</span>Performing a round of scaling with an LBFGS minimizer.
<span class="linenos">127</span>
<span class="linenos">128</span>Time taken for refinement 1.02
<span class="linenos">128</span>Time taken for refinement 1.00
<span class="linenos">129</span>
<span class="linenos">130</span>Refinement steps:
<span class="linenos">131</span>+--------+--------+----------+
Expand Down Expand Up @@ -3980,7 +3980,7 @@ <h3>Scaling and Merging<a class="headerlink" href="#scaling-and-merging" title="
<span class="linenos">177</span>Components to be refined in this cycle for all datasets: scale, decay, absorption
<span class="linenos">178</span>Performing a round of scaling with a Levenberg-Marquardt minimizer.
<span class="linenos">179</span>
<span class="linenos">180</span>Time taken for refinement 3.63
<span class="linenos">180</span>Time taken for refinement 3.55
<span class="linenos">181</span>
<span class="linenos">182</span>Refinement steps:
<span class="linenos">183</span>+--------+--------+----------+
Expand All @@ -4001,7 +4001,7 @@ <h3>Scaling and Merging<a class="headerlink" href="#scaling-and-merging" title="
<span class="linenos">198</span>Components to be refined in this cycle for all datasets: scale, decay, absorption
<span class="linenos">199</span>Performing a round of scaling with a Levenberg-Marquardt minimizer.
<span class="linenos">200</span>
<span class="linenos">201</span>Time taken for refinement 1.18
<span class="linenos">201</span>Time taken for refinement 1.12
<span class="linenos">202</span>
<span class="linenos">203</span>Refinement steps:
<span class="linenos">204</span>+--------+--------+----------+
Expand Down Expand Up @@ -4051,7 +4051,7 @@ <h3>Scaling and Merging<a class="headerlink" href="#scaling-and-merging" title="
<span class="linenos">248</span>The reflection table variances have been adjusted to account for the
<span class="linenos">249</span>uncertainty in the scaling model
<span class="linenos">250</span>
<span class="linenos">251</span>Total time taken: 19.3248s
<span class="linenos">251</span>Total time taken: 18.7948s
<span class="linenos">252</span>
<span class="linenos">253</span>================================================================================
<span class="linenos">254</span>
Expand Down
2 changes: 1 addition & 1 deletion searchindex.js
View file

Large diffs are not rendered by default.

0 comments on commit 4aa3395

Please sign in to comment.