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DiamondLightSource-build-server committed May 12, 2024
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28 changes: 14 additions & 14 deletions documentation/tutorials/mpro_x0692.html
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Expand Up @@ -2149,12 +2149,12 @@ <h3>Integration<a class="headerlink" href="#integration" title="Link to this hea
<span class="linenos"> 548</span>
<span class="linenos"> 549</span>Timing information for reference profile formation
<span class="linenos"> 550</span>+-------------------+---------------+
<span class="linenos"> 551</span>| Read time | 14.98 seconds |
<span class="linenos"> 552</span>| Extract time | 0.39 seconds |
<span class="linenos"> 551</span>| Read time | 15.20 seconds |
<span class="linenos"> 552</span>| Extract time | 0.34 seconds |
<span class="linenos"> 553</span>| Pre-process time | 0.02 seconds |
<span class="linenos"> 554</span>| Process time | 8.70 seconds |
<span class="linenos"> 554</span>| Process time | 8.26 seconds |
<span class="linenos"> 555</span>| Post-process time | 0.00 seconds |
<span class="linenos"> 556</span>| Total time | 24.19 seconds |
<span class="linenos"> 556</span>| Total time | 24.09 seconds |
<span class="linenos"> 557</span>+-------------------+---------------+
<span class="linenos"> 558</span>
<span class="linenos"> 559</span>================================================================================
Expand Down Expand Up @@ -2685,12 +2685,12 @@ <h3>Integration<a class="headerlink" href="#integration" title="Link to this hea
<span class="linenos">1084</span>
<span class="linenos">1085</span>Timing information for integration
<span class="linenos">1086</span>+-------------------+----------------+
<span class="linenos">1087</span>| Read time | 15.77 seconds |
<span class="linenos">1088</span>| Extract time | 5.83 seconds |
<span class="linenos">1089</span>| Pre-process time | 0.24 seconds |
<span class="linenos">1090</span>| Process time | 131.16 seconds |
<span class="linenos">1087</span>| Read time | 16.00 seconds |
<span class="linenos">1088</span>| Extract time | 6.03 seconds |
<span class="linenos">1089</span>| Pre-process time | 0.25 seconds |
<span class="linenos">1090</span>| Process time | 126.28 seconds |
<span class="linenos">1091</span>| Post-process time | 0.00 seconds |
<span class="linenos">1092</span>| Total time | 153.86 seconds |
<span class="linenos">1092</span>| Total time | 149.40 seconds |
<span class="linenos">1093</span>+-------------------+----------------+
<span class="linenos">1094</span>
<span class="linenos">1095</span>Removing 22837 unintegrated reflections of 199395 total
Expand Down Expand Up @@ -2983,7 +2983,7 @@ <h3>Scaling and Merging<a class="headerlink" href="#scaling-and-merging" title="
<span class="linenos"> 67</span>Components to be refined in this cycle for all datasets: scale, decay, absorption
<span class="linenos"> 68</span>Performing a round of scaling with an LBFGS minimizer.
<span class="linenos"> 69</span>
<span class="linenos"> 70</span>Time taken for refinement 6.65
<span class="linenos"> 70</span>Time taken for refinement 6.76
<span class="linenos"> 71</span>
<span class="linenos"> 72</span>Refinement steps:
<span class="linenos"> 73</span>+--------+--------+----------+
Expand Down Expand Up @@ -3062,7 +3062,7 @@ <h3>Scaling and Merging<a class="headerlink" href="#scaling-and-merging" title="
<span class="linenos">146</span>Components to be refined in this cycle for all datasets: scale, decay, absorption
<span class="linenos">147</span>Performing a round of scaling with an LBFGS minimizer.
<span class="linenos">148</span>
<span class="linenos">149</span>Time taken for refinement 2.89
<span class="linenos">149</span>Time taken for refinement 2.95
<span class="linenos">150</span>
<span class="linenos">151</span>Refinement steps:
<span class="linenos">152</span>+--------+--------+----------+
Expand Down Expand Up @@ -3125,7 +3125,7 @@ <h3>Scaling and Merging<a class="headerlink" href="#scaling-and-merging" title="
<span class="linenos">209</span>Components to be refined in this cycle for all datasets: scale, decay, absorption
<span class="linenos">210</span>Performing a round of scaling with a Levenberg-Marquardt minimizer.
<span class="linenos">211</span>
<span class="linenos">212</span>Time taken for refinement 4.09
<span class="linenos">212</span>Time taken for refinement 4.16
<span class="linenos">213</span>
<span class="linenos">214</span>Refinement steps:
<span class="linenos">215</span>+--------+--------+----------+
Expand All @@ -3149,7 +3149,7 @@ <h3>Scaling and Merging<a class="headerlink" href="#scaling-and-merging" title="
<span class="linenos">233</span>Components to be refined in this cycle for all datasets: scale, decay, absorption
<span class="linenos">234</span>Performing a round of scaling with a Levenberg-Marquardt minimizer.
<span class="linenos">235</span>
<span class="linenos">236</span>Time taken for refinement 0.84
<span class="linenos">236</span>Time taken for refinement 0.87
<span class="linenos">237</span>
<span class="linenos">238</span>Refinement steps:
<span class="linenos">239</span>+--------+--------+----------+
Expand Down Expand Up @@ -3199,7 +3199,7 @@ <h3>Scaling and Merging<a class="headerlink" href="#scaling-and-merging" title="
<span class="linenos">283</span>The reflection table variances have been adjusted to account for the
<span class="linenos">284</span>uncertainty in the scaling model
<span class="linenos">285</span>
<span class="linenos">286</span>Total time taken: 19.8654s
<span class="linenos">286</span>Total time taken: 20.2546s
<span class="linenos">287</span>
<span class="linenos">288</span>================================================================================
<span class="linenos">289</span>
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18 changes: 9 additions & 9 deletions documentation/tutorials/multi_crystal_symmetry_and_scaling.html
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Expand Up @@ -721,7 +721,7 @@ <h2>Manual reprocessing<a class="headerlink" href="#manual-reprocessing" title="
<span class="n">Components</span> <span class="n">to</span> <span class="n">be</span> <span class="n">refined</span> <span class="ow">in</span> <span class="n">this</span> <span class="n">cycle</span> <span class="k">for</span> <span class="nb">all</span> <span class="n">datasets</span><span class="p">:</span> <span class="n">scale</span><span class="p">,</span> <span class="n">decay</span><span class="p">,</span> <span class="n">absorption</span>
<span class="n">Performing</span> <span class="n">a</span> <span class="nb">round</span> <span class="n">of</span> <span class="n">scaling</span> <span class="k">with</span> <span class="n">an</span> <span class="n">LBFGS</span> <span class="n">minimizer</span><span class="o">.</span>

<span class="n">Time</span> <span class="n">taken</span> <span class="k">for</span> <span class="n">refinement</span> <span class="mf">1.50</span>
<span class="n">Time</span> <span class="n">taken</span> <span class="k">for</span> <span class="n">refinement</span> <span class="mf">1.49</span>

<span class="n">Refinement</span> <span class="n">steps</span><span class="p">:</span>
<span class="o">+--------+--------+----------+</span>
Expand Down Expand Up @@ -765,7 +765,7 @@ <h2>Manual reprocessing<a class="headerlink" href="#manual-reprocessing" title="
<span class="n">Components</span> <span class="n">to</span> <span class="n">be</span> <span class="n">refined</span> <span class="ow">in</span> <span class="n">this</span> <span class="n">cycle</span> <span class="k">for</span> <span class="nb">all</span> <span class="n">datasets</span><span class="p">:</span> <span class="n">scale</span><span class="p">,</span> <span class="n">decay</span><span class="p">,</span> <span class="n">absorption</span>
<span class="n">Performing</span> <span class="n">a</span> <span class="nb">round</span> <span class="n">of</span> <span class="n">scaling</span> <span class="k">with</span> <span class="n">an</span> <span class="n">LBFGS</span> <span class="n">minimizer</span><span class="o">.</span>

<span class="n">Time</span> <span class="n">taken</span> <span class="k">for</span> <span class="n">refinement</span> <span class="mf">1.30</span>
<span class="n">Time</span> <span class="n">taken</span> <span class="k">for</span> <span class="n">refinement</span> <span class="mf">1.29</span>

<span class="n">Refinement</span> <span class="n">steps</span><span class="p">:</span>
<span class="o">+--------+--------+----------+</span>
Expand Down Expand Up @@ -819,7 +819,7 @@ <h2>Manual reprocessing<a class="headerlink" href="#manual-reprocessing" title="
<span class="n">Components</span> <span class="n">to</span> <span class="n">be</span> <span class="n">refined</span> <span class="ow">in</span> <span class="n">this</span> <span class="n">cycle</span> <span class="k">for</span> <span class="nb">all</span> <span class="n">datasets</span><span class="p">:</span> <span class="n">scale</span><span class="p">,</span> <span class="n">decay</span><span class="p">,</span> <span class="n">absorption</span>
<span class="n">Performing</span> <span class="n">a</span> <span class="nb">round</span> <span class="n">of</span> <span class="n">scaling</span> <span class="k">with</span> <span class="n">a</span> <span class="n">Levenberg</span><span class="o">-</span><span class="n">Marquardt</span> <span class="n">minimizer</span><span class="o">.</span>

<span class="n">Time</span> <span class="n">taken</span> <span class="k">for</span> <span class="n">refinement</span> <span class="mf">10.63</span>
<span class="n">Time</span> <span class="n">taken</span> <span class="k">for</span> <span class="n">refinement</span> <span class="mf">10.49</span>

<span class="n">Refinement</span> <span class="n">steps</span><span class="p">:</span>
<span class="o">+--------+--------+----------+</span>
Expand All @@ -840,7 +840,7 @@ <h2>Manual reprocessing<a class="headerlink" href="#manual-reprocessing" title="
<span class="n">Components</span> <span class="n">to</span> <span class="n">be</span> <span class="n">refined</span> <span class="ow">in</span> <span class="n">this</span> <span class="n">cycle</span> <span class="k">for</span> <span class="nb">all</span> <span class="n">datasets</span><span class="p">:</span> <span class="n">scale</span><span class="p">,</span> <span class="n">decay</span><span class="p">,</span> <span class="n">absorption</span>
<span class="n">Performing</span> <span class="n">a</span> <span class="nb">round</span> <span class="n">of</span> <span class="n">scaling</span> <span class="k">with</span> <span class="n">a</span> <span class="n">Levenberg</span><span class="o">-</span><span class="n">Marquardt</span> <span class="n">minimizer</span><span class="o">.</span>

<span class="n">Time</span> <span class="n">taken</span> <span class="k">for</span> <span class="n">refinement</span> <span class="mf">3.46</span>
<span class="n">Time</span> <span class="n">taken</span> <span class="k">for</span> <span class="n">refinement</span> <span class="mf">3.40</span>

<span class="n">Refinement</span> <span class="n">steps</span><span class="p">:</span>
<span class="o">+--------+--------+----------+</span>
Expand Down Expand Up @@ -894,7 +894,7 @@ <h2>Manual reprocessing<a class="headerlink" href="#manual-reprocessing" title="
<span class="n">uncertainty</span> <span class="ow">in</span> <span class="n">the</span> <span class="n">scaling</span> <span class="n">models</span> <span class="k">for</span> <span class="nb">all</span> <span class="n">datasets</span>
<span class="n">Using</span> <span class="n">median</span> <span class="n">unit</span> <span class="n">cell</span> <span class="n">across</span> <span class="n">experiments</span> <span class="p">:</span> <span class="p">(</span><span class="mf">68.3603</span><span class="p">,</span> <span class="mf">68.3603</span><span class="p">,</span> <span class="mf">103.953</span><span class="p">,</span> <span class="mi">90</span><span class="p">,</span> <span class="mi">90</span><span class="p">,</span> <span class="mi">90</span><span class="p">)</span>

<span class="n">Total</span> <span class="n">time</span> <span class="n">taken</span><span class="p">:</span> <span class="mf">22.8876</span><span class="n">s</span>
<span class="n">Total</span> <span class="n">time</span> <span class="n">taken</span><span class="p">:</span> <span class="mf">22.6762</span><span class="n">s</span>

<span class="o">================================================================================</span>

Expand Down Expand Up @@ -1392,7 +1392,7 @@ <h2>Almost there<a class="headerlink" href="#almost-there" title="Link to this h
<span class="n">Components</span> <span class="n">to</span> <span class="n">be</span> <span class="n">refined</span> <span class="ow">in</span> <span class="n">this</span> <span class="n">cycle</span> <span class="k">for</span> <span class="nb">all</span> <span class="n">datasets</span><span class="p">:</span> <span class="n">scale</span><span class="p">,</span> <span class="n">decay</span><span class="p">,</span> <span class="n">absorption</span>
<span class="n">Performing</span> <span class="n">a</span> <span class="nb">round</span> <span class="n">of</span> <span class="n">scaling</span> <span class="k">with</span> <span class="n">a</span> <span class="n">Levenberg</span><span class="o">-</span><span class="n">Marquardt</span> <span class="n">minimizer</span><span class="o">.</span>

<span class="n">Time</span> <span class="n">taken</span> <span class="k">for</span> <span class="n">refinement</span> <span class="mf">9.73</span>
<span class="n">Time</span> <span class="n">taken</span> <span class="k">for</span> <span class="n">refinement</span> <span class="mf">8.68</span>

<span class="n">Refinement</span> <span class="n">steps</span><span class="p">:</span>
<span class="o">+--------+--------+----------+</span>
Expand All @@ -1412,7 +1412,7 @@ <h2>Almost there<a class="headerlink" href="#almost-there" title="Link to this h
<span class="n">Components</span> <span class="n">to</span> <span class="n">be</span> <span class="n">refined</span> <span class="ow">in</span> <span class="n">this</span> <span class="n">cycle</span> <span class="k">for</span> <span class="nb">all</span> <span class="n">datasets</span><span class="p">:</span> <span class="n">scale</span><span class="p">,</span> <span class="n">decay</span><span class="p">,</span> <span class="n">absorption</span>
<span class="n">Performing</span> <span class="n">a</span> <span class="nb">round</span> <span class="n">of</span> <span class="n">scaling</span> <span class="k">with</span> <span class="n">a</span> <span class="n">Levenberg</span><span class="o">-</span><span class="n">Marquardt</span> <span class="n">minimizer</span><span class="o">.</span>

<span class="n">Time</span> <span class="n">taken</span> <span class="k">for</span> <span class="n">refinement</span> <span class="mf">3.41</span>
<span class="n">Time</span> <span class="n">taken</span> <span class="k">for</span> <span class="n">refinement</span> <span class="mf">3.38</span>

<span class="n">Refinement</span> <span class="n">steps</span><span class="p">:</span>
<span class="o">+--------+--------+----------+</span>
Expand Down Expand Up @@ -1466,7 +1466,7 @@ <h2>Almost there<a class="headerlink" href="#almost-there" title="Link to this h
<span class="n">uncertainty</span> <span class="ow">in</span> <span class="n">the</span> <span class="n">scaling</span> <span class="n">models</span> <span class="k">for</span> <span class="nb">all</span> <span class="n">datasets</span>
<span class="n">Using</span> <span class="n">median</span> <span class="n">unit</span> <span class="n">cell</span> <span class="n">across</span> <span class="n">experiments</span> <span class="p">:</span> <span class="p">(</span><span class="mf">68.3603</span><span class="p">,</span> <span class="mf">68.3603</span><span class="p">,</span> <span class="mf">103.953</span><span class="p">,</span> <span class="mi">90</span><span class="p">,</span> <span class="mi">90</span><span class="p">,</span> <span class="mi">90</span><span class="p">)</span>

<span class="n">Total</span> <span class="n">time</span> <span class="n">taken</span><span class="p">:</span> <span class="mf">20.6513</span><span class="n">s</span>
<span class="n">Total</span> <span class="n">time</span> <span class="n">taken</span><span class="p">:</span> <span class="mf">19.3186</span><span class="n">s</span>

<span class="o">================================================================================</span>

Expand Down Expand Up @@ -2007,7 +2007,7 @@ <h2>Almost there<a class="headerlink" href="#almost-there" title="Link to this h
<span class="n">Number</span> <span class="n">of</span> <span class="n">Miller</span> <span class="n">indices</span><span class="p">:</span> <span class="mi">20799</span>
<span class="n">Resolution</span> <span class="nb">range</span><span class="p">:</span> <span class="mf">68.3603</span> <span class="mf">1.78117</span>
<span class="n">History</span><span class="p">:</span>
<span class="n">From</span> <span class="n">DIALS</span> <span class="mf">3.</span><span class="n">dev</span><span class="mf">.1120</span><span class="o">-</span><span class="n">g9af1ec126</span><span class="p">,</span> <span class="n">run</span> <span class="n">on</span> <span class="mi">2024</span><span class="o">-</span><span class="mi">05</span><span class="o">-</span><span class="mi">04</span> <span class="n">at</span> <span class="mi">08</span><span class="p">:</span><span class="mi">18</span><span class="p">:</span><span class="mi">17</span> <span class="n">BST</span> <span class="p">(</span><span class="mi">2024</span><span class="o">-</span><span class="mi">05</span><span class="o">-</span><span class="mi">04</span>
<span class="n">From</span> <span class="n">DIALS</span> <span class="mf">3.</span><span class="n">dev</span><span class="mf">.1120</span><span class="o">-</span><span class="n">g9af1ec126</span><span class="p">,</span> <span class="n">run</span> <span class="n">on</span> <span class="mi">2024</span><span class="o">-</span><span class="mi">05</span><span class="o">-</span><span class="mi">11</span> <span class="n">at</span> <span class="mi">08</span><span class="p">:</span><span class="mi">17</span><span class="p">:</span><span class="mi">36</span> <span class="n">BST</span> <span class="p">(</span><span class="mi">2024</span><span class="o">-</span><span class="mi">05</span><span class="o">-</span><span class="mi">11</span>
<span class="n">Crystal</span> <span class="mi">1</span><span class="p">:</span>
<span class="n">Name</span><span class="p">:</span> <span class="n">HKL_base</span>
<span class="n">Project</span><span class="p">:</span> <span class="n">HKL_base</span>
Expand Down
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