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Fix error or loading internal tool
SIFT
Error popping up all the time: ``` Traceback (most recent call last): File "/gpfs1/data/galaxy_server/galaxy/lib/galaxy/tool_util/toolbox/base.py", line 873, in _load_tool_tag_set tool = self.load_tool(concrete_path, use_cached=False, tool_cache_data_dir=tool_cache_data_dir) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/gpfs1/data/galaxy_server/galaxy/lib/galaxy/tool_util/toolbox/base.py", line 1100, in load_tool tool = self.create_tool( ^^^^^^^^^^^^^^^^^ File "/gpfs1/data/galaxy_server/galaxy/lib/galaxy/tools/__init__.py", line 547, in create_tool return self._create_tool_from_source(tool_source, config_file=config_file, **kwds) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/gpfs1/data/galaxy_server/galaxy/lib/galaxy/tools/__init__.py", line 563, in _create_tool_from_source return create_tool_from_source(self.app, tool_source, **kwds) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/gpfs1/data/galaxy_server/galaxy/lib/galaxy/tools/__init__.py", line 355, in create_tool_from_source tool = ToolClass(config_file, tool_source, app, **kwds) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/gpfs1/data/galaxy_server/galaxy/lib/galaxy/tools/__init__.py", line 820, in __init__ raise e File "/gpfs1/data/galaxy_server/galaxy/lib/galaxy/tools/__init__.py", line 817, in __init__ self.parse(tool_source, guid=guid, dynamic=dynamic) File "/gpfs1/data/galaxy_server/galaxy/lib/galaxy/tools/__init__.py", line 1142, in parse self.parse_inputs(self.tool_source) File "/gpfs1/data/galaxy_server/galaxy/lib/galaxy/tools/__init__.py", line 1427, in parse_inputs inputs = self.parse_input_elem(page_source, enctypes) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/gpfs1/data/galaxy_server/galaxy/lib/galaxy/tools/__init__.py", line 1622, in parse_input_elem param = self.parse_param_elem(input_source, enctypes, context) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/gpfs1/data/galaxy_server/galaxy/lib/galaxy/tools/__init__.py", line 1635, in parse_param_elem param = ToolParameter.build(self, input_source) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/gpfs1/data/galaxy_server/galaxy/lib/galaxy/tools/parameters/basic.py", line 330, in build return parameter_types[param_type](tool, input_source) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/gpfs1/data/galaxy_server/galaxy/lib/galaxy/tools/parameters/basic.py", line 2071, in __init__ super().__init__(tool, input_source, trans) File "/gpfs1/data/galaxy_server/galaxy/lib/galaxy/tools/parameters/basic.py", line 1863, in __init__ super().__init__(tool, input_source) File "/gpfs1/data/galaxy_server/galaxy/lib/galaxy/tools/parameters/basic.py", line 186, in __init__ self.validators.append(validation.Validator.from_element(self, elem)) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/gpfs1/data/galaxy_server/galaxy/lib/galaxy/tools/parameters/validation.py", line 45, in from_element return validator_types[_type].from_element(param, elem) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/gpfs1/data/galaxy_server/galaxy/lib/galaxy/tools/parameters/validation.py", line 399, in from_element assert os.path.exists(filename), f"File {filename} specified by the 'filename' attribute not found" AssertionError: File /gpfs1/data/galaxy_server/galaxy/tool-data/sift_db.loc specified by the 'filename' attribute not found ``` I think using the other validator should not cause so much trouble.
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