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Moved error-correct-pass2 from sandbox to scripts
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Will Trimble committed Jul 11, 2017
1 parent c6c4e9a commit 6c333f2
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2 changes: 1 addition & 1 deletion examples/stamps/do.sh
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Expand Up @@ -46,7 +46,7 @@ normalize-by-median.py -k 20 -C 10 -x 1e8 ../../data/stamps-reads.fa.gz \
abundance-dist.py stamps-dn.ct stamps-reads.fa.gz.keep stamps-dn.hist
do-partition.py -k 32 -x 1e8 -s 1e4 -T 8 stamps-part \
../../data/stamps-reads.fa.gz
../../sandbox/error-correct-pass2.py --trusted-cov 10 stamps-dn.ct \
error-correct-pass2.py --trusted-cov 10 stamps-dn.ct \
../../data/stamps-reads.fa.gz
load-into-counting.py -x 1e8 -k 20 stamps-corr.ct stamps-reads.fa.gz.corr
abundance-dist.py stamps-corr.ct stamps-reads.fa.gz.corr stamps-corr.hist
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