remove the row with only one column #202
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| name: obo2json | |
| on: | |
| push: | |
| branches: | |
| - master | |
| jobs: | |
| convert: | |
| env: | |
| COMMIT_LIST_FILE: ${{ github.workspace }}/committed.txt | |
| OBOJSON_DIR : ${{ github.workspace }}/obograph-json | |
| GITHUB_ACTION_DIR: ${{ github.workspace }}/github-actions/bin | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - name: check out code | |
| uses: actions/checkout@v2 | |
| - name: create necessary dirs | |
| run: | | |
| mkdir -p ${OBOJSON_DIR} | |
| mkdir -p ${GITHUB_ACTION_DIR} | |
| - name: download and setup path for github action binary | |
| run: | | |
| curl -L -o ${GITHUB_ACTION_DIR}/actions https://github.com/dictybase-docker/github-actions/releases/download/v2.3.0/action_2.3.0_Linux_x86_64 | |
| chmod +x ${GITHUB_ACTION_DIR}/actions | |
| echo "${GITHUB_ACTION_DIR}" >> $GITHUB_PATH | |
| - name: create a list of modified obo files | |
| run: actions --log-level debug -t ${{ secrets.GITHUB_TOKEN }} fc --payload-file ${GITHUB_EVENT_PATH} -o ${COMMIT_LIST_FILE} --ifs obo --sd true | |
| - name: run obo to json converter | |
| uses: docker://dictybase/ontobot:1.8.3 | |
| with: | |
| entrypoint: /usr/local/bin/convert | |
| - name: setup vars for changed files | |
| id: git_diff | |
| run: | | |
| echo "::set-output name=git_changes::no" | |
| if [ -e ${COMMIT_LIST_FILE} ] | |
| then | |
| echo "::set-output name=git_changes::yes" | |
| fi | |
| - name: extract user information | |
| if: contains(steps.git_diff.outputs.git_changes, 'yes') | |
| id: user_info | |
| uses: actions/github-script@v3 | |
| with: | |
| github-token: ${{secrets.GITHUB_TOKEN}} | |
| script: | | |
| const { data } = await github.users.getByUsername({ | |
| username: context.payload.sender.login | |
| }) | |
| core.setOutput("name", data.name) | |
| core.setOutput("email", data.email) | |
| - name: push the changed obo json files | |
| if: contains(steps.git_diff.outputs.git_changes, 'yes') | |
| run: | | |
| git config --global user.email ${{ steps.user_info.outputs.email }} | |
| git config --global user.name ${{ steps.user_info.outputs.name }} | |
| git add obograph-json | |
| git commit -a -m 'update obo json files on '$(date +"%m-%d-%Y:%H:%m:%S") | |
| git push origin $(git rev-parse --abbrev-ref HEAD) |