Add a Dockerfile for v0.2

ding-lab · May 21, 2019 · 9354de0 · 9354de0
1 parent a946f82
commit 9354de0
Showing 1 changed file with 11 additions and 0 deletions.
diff --git a/Dockerfile b/Dockerfile
@@ -0,0 +1,11 @@
+FROM ubuntu:16.04
+
+RUN apt-get update && apt-get install -y git make build-essential zlib1g-dev libncurses5-dev libncursesw5-dev samtools=0.1.19-1ubuntu1 python-pysam libbam-dev
+
+RUN cd /tmp \
+  && git clone https://github.com/ding-lab/msisensor.git msisensor_install_dir \
+  && export SAMTOOLS_ROOT=/usr/lib/python2.7/dist-packages/pysam/include/samtools/ \
+  && cd msisensor_install_dir \
+  && git checkout 0.2 \
+  && make \
+  && mv /tmp/msisensor_install_dir/msisensor /usr/bin/