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rcwrapper; v1.0

Calculate vaf for a list of variants (snv and indel) based on bam;

please follow work_log_gbm_rc to submit jobs on compute1

Input file

Tumor and normal bam (*bam) and index files (*bai) and vcf file which contains the following fields:

chr2 233464232 233464234 GCT -

chr2 233844246 233844246 G A

Contact

Song Cao, [email protected]

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calculate vaf for variants based on bam

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