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fix filesystem test
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make filesystem duckdb instance use glob pattern
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sh-rp committed Aug 7, 2024
1 parent 152b788 commit 6d73bc5
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Showing 2 changed files with 12 additions and 8 deletions.
3 changes: 2 additions & 1 deletion dlt/destinations/impl/filesystem/filesystem.py
Original file line number Diff line number Diff line change
Expand Up @@ -620,6 +620,7 @@ def get_duckdb(

# create all tables in duck instance
for ptable in tables:
folder = self.get_table_dir(ptable)
files = self.list_table_files(ptable)
# discover tables files
file_type = os.path.splitext(files[0])[1][1:]
Expand All @@ -632,7 +633,7 @@ def get_duckdb(

# create table
protocol = "" if self.is_local_filesystem else f"{self.config.protocol}://"
files_string = ",".join([f"'{protocol}{f}'" for f in files])
files_string = f"'{protocol}{folder}/**/*.{file_type}'"
create_table_sql_base = (
f"CREATE {table_type} {ptable} AS SELECT * FROM {read_command}([{files_string}])"
)
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17 changes: 10 additions & 7 deletions tests/load/test_read_interfaces.py
Original file line number Diff line number Diff line change
Expand Up @@ -14,6 +14,7 @@
def _run_dataset_checks(pipeline: Pipeline) -> None:
destination_type = pipeline.destination_client().config.destination_type

skip_df_chunk_size_check = False
if destination_type == "bigquery":
chunk_size = 50
total_records = 80
Expand All @@ -24,6 +25,10 @@ def _run_dataset_checks(pipeline: Pipeline) -> None:
chunk_size = 2048
total_records = 3000

# on filesystem one chunk is one file and not the default vector size
if destination_type == "filesystem":
skip_df_chunk_size_check = True

# we always expect 2 chunks based on the above setup
expected_chunk_counts = [chunk_size, total_records - chunk_size]

Expand Down Expand Up @@ -55,18 +60,16 @@ def items():
# check dataframes
#

# full frame
df = relationship.df()
assert len(df.index) == total_records

# chunk
df = relationship.df(chunk_size=chunk_size)
assert len(df.index) == chunk_size
if not skip_df_chunk_size_check:
assert len(df.index) == chunk_size
assert set(df.columns.values) == {"id", "_dlt_load_id", "_dlt_id"}

# iterate all dataframes
frames = list(relationship.iter_df(chunk_size=chunk_size))
assert [len(df.index) for df in frames] == expected_chunk_counts
if not skip_df_chunk_size_check:
assert [len(df.index) for df in frames] == expected_chunk_counts

# check all items are present
ids = reduce(lambda a, b: a + b, [f["id"].to_list() for f in frames])
Expand Down Expand Up @@ -144,7 +147,7 @@ def test_read_interfaces_sql(destination_config: DestinationTestConfiguration) -
)
def test_read_interfaces_filesystem(destination_config: DestinationTestConfiguration) -> None:
# we force multiple files per table, they may only hold 50 items
os.environ["DATA_WRITER__FILE_MAX_ITEMS"] = "30"
os.environ["DATA_WRITER__FILE_MAX_ITEMS"] = "700"

if destination_config.file_format not in ["parquet", "jsonl"]:
pytest.skip(
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