Command line interface for neuropype_ephy package and more wrapping up some mne-python functions with powerful nipype framework.
For now CLI works only with python2; python3 support might also happen in the future.
Full list of dependencies can be found here.
No need to install them manually though. All dependencies are installed automatically during the Installation step
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First, clone the package sources and go inside the project folder:
git clone https://github.com/dmalt/neuropype_cli.git cd neuropype_cli -
The simplest way to install the package is as follows:
pip install . cd ..
But it is strongly recommended to install neuroclick under virtual environement so the dependencies don't damage your current python setup.
To do so perform the following steps:
- Install virtualenv package if it's not already in your system
- Think of a name for your virtual environement (i.e. neuroenv) and
create virtual environement inside the project folder by running
virtualenv neuroenv
- Activate your virtual environement:
source ./neuroenv/bin/activate - Perform the installation (note the '.' symbol in the end):
pip install . cd .. # exit from the project folder
If you've been using virtualenv you should activate it each time you are running neuroclick
- You can check the installation by running
neuropype --help
For quick ref check out my presentation on neuropype_cli package
Detailed documentation can be found here