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An attempt to model time series dynamics of biochemical networks using Extended Dynamic Mode Decomposition with tuneable parameters.

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.DS_Store
.DS_Store
 
 
Data_Generation_CFS_control.py
Data_Generation_CFS_control.py
 
 
Data_Generation_Toggle_Switch_control.ipynb
Data_Generation_Toggle_Switch_control.ipynb
 
 
Least Squares estimation of TS parameters_Dog_box.ipynb
Least Squares estimation of TS parameters_Dog_box.ipynb
 
 
Least Squares estimation of TS parameters_Trust_Region_Reflective-Copy1.ipynb
Least Squares estimation of TS parameters_Trust_Region_Reflective-Copy1.ipynb
 
 
Least Squares estimation of TS parameters_Trust_Region_Reflective.ipynb
Least Squares estimation of TS parameters_Trust_Region_Reflective.ipynb
 
 
Least Squares estimation of TS parameters_Trust_Region_Reflective_simplified-MultipleICs.ipynb
Least Squares estimation of TS parameters_Trust_Region_Reflective_simplified-MultipleICs.ipynb
 
 
Least Squares estimation of TS parameters_Trust_Region_Reflective_simplified.ipynb
Least Squares estimation of TS parameters_Trust_Region_Reflective_simplified.ipynb
 
 
Parameter Estimation of Michelis Menten Constants.ipynb
Parameter Estimation of Michelis Menten Constants.ipynb
 
 
README.md
README.md
 
 
TS_nonlinear_optimization.ipynb
TS_nonlinear_optimization.ipynb
 
 
TunnelDMD_CFS_control.ipynb
TunnelDMD_CFS_control.ipynb
 
 
TunnelDMD_ToggleSwitch-TwoFP.ipynb
TunnelDMD_ToggleSwitch-TwoFP.ipynb
 
 
TunnelDMD_ToggleSwitch-rep2-Copy1.ipynb
TunnelDMD_ToggleSwitch-rep2-Copy1.ipynb
 
 
TunnelDMD_ToggleSwitch-rep2.ipynb
TunnelDMD_ToggleSwitch-rep2.ipynb
 
 
TunnelDMD_ToggleSwitch-rep3.ipynb
TunnelDMD_ToggleSwitch-rep3.ipynb
 
 
TunnelDMD_ToggleSwitch-rep3_activator_repressor_learning.ipynb
TunnelDMD_ToggleSwitch-rep3_activator_repressor_learning.ipynb
 
 
TunnelDMD_ToggleSwitch.ipynb
TunnelDMD_ToggleSwitch.ipynb
 
 
rearranged_dsgrn_simulation_data_unscaled.pickle
rearranged_dsgrn_simulation_data_unscaled.pickle
 
 
server_model.py
server_model.py
 
 

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An attempt to model time series dynamics of biochemical networks using Extended Dynamic Mode Decomposition with tuneable parameters.

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