[R] Make remaining parameters formal arguments to `xgboost()` #11613

Job	Run time
Build libxgboost4j.so with CUDA	6m 2s
Build libxgboost4j.dylib for MacOS (Apple Silicon)	1m 32s
Build libxgboost4j.dylib for MacOS (Intel)	2m 50s
Build and test JVM packages (Linux, Scala 2.12)	10m 21s
Build libxgboost4j.so targeting glibc 2.17 (arch aarch64, runner linux-arm64-cpu)	2m 4s
Build and test JVM packages (Linux, Scala 2.13)	5m 16s
Build libxgboost4j.so targeting glibc 2.17 (arch x86_64, runner linux-amd64-cpu)	1m 52s
Build and test JVM packages (windows-latest)	9m 14s
Build and test JVM packages (macos-13)	11m 52s
Build docs for JVM packages	4m 32s
Test JVM packages with CUDA (Scala 2.12)	5m 53s
Test JVM packages with CUDA (Scala 2.13)	5m 55s
Deploy JVM packages to S3 (cpu)	7s
Deploy JVM packages to S3 (cpu)	9s
Deploy JVM packages to S3 (gpu)	11s
Deploy JVM packages to S3 (gpu)	10s
	1h 8m 0s

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