CompEvo User Guide

Comparative and Evolutionary Genomics Workflow

Snakemake workflow for comparative and evolutionary genomics. It is specially adapted to analyze the predictions generated EXOGAP.

Authors

Dorine Merlat, iCube, University of Strasbourg, France, [email protected]

What is CompEvo ?

Getting Started

Prerequisites

Les protéomes doivent avoir les en-têtes au même format que Uniprot, chaque protéome doit être placé dans un fichier. Pas d'isoformes, uniquement les formes canoniques.

Installation

1. Install SnakeMake following the procedure indicated here.

2. Clone the repository

   clone git https://github.com/dorinemerlat/CompEvo.git

Usage

snakemake --use-conda --cores 64 [endfile]

License

Distributed under the MIT License. See LICENSE.txt for more information.