Release Peptides v1.0 · dosorio/Peptides

Available functions

Code	Function
aacomp	Compute the amino-acid composition of a protein sequence
aindex	Compute the aliphatic index of a protein sequence
boman	Compute the Boman (Potential Protein Interaction) index
charge	Compute the theoretical net charge of a protein sequence
hydrophobicity	Compute the hydrophobicity index
hmoment	Compute the hydrophobic moment of a protein sequence
instaindex	Compute the instability index of a protein sequence
lengthpep	Compute the aminoacid length of a protein sequence
membpos	Compute theoretically the class of a protein sequence
mw	Compute the molecular weight of a protein sequence
pI	Compute the isoelectic point (pI) of a protein sequence
plot.xvg	Plot time series from GROMACS XVG files
read.xvg	Read XVG files from GROMACS molecular dynamics package

Code	Description
H	24 Hydrophobicity values for amino acids form ExPASy "protscale"
Pepdata	A data frame with physicochemical properties and indices from 100 amino-acid sequences (50 antimicrobial and 50 non antimicrobial)
pKscales	9 pKa scales for the side chain of charged amino acids from various sources