Whitespace in sequences is now removed to avoid problems with SABINE

git-svn-id: svn://rarepos.cs.uni-tuebingen.de/tfpredict@103 71221333-9ef9-431f-bb7f-117e0a61b720
draeger-lab · Oct 20, 2015 · c1c3c34 · c1c3c34
1 parent 74f6543
commit c1c3c34
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diff --git a/dist/TFpredict_1.3.jar b/dist/TFpredict_1.3.jar
diff --git a/src/io/BasicTools.java b/src/io/BasicTools.java
@@ -309,7 +309,7 @@ public static Map<String, String> readFASTA(String fasta_file, boolean readFullH
 					curr_seq = new StringBuffer();
 					first = false;
 				} else {
-					curr_seq.append(line);
+					curr_seq.append(line.replaceAll("\\s+",""));
 				}
 			}