Updated substances2db in database #16

draeger-lab · Feb 21, 2024 · 0504520 · 0504520
1 parent e927bf7
commit 0504520
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Showing 3 changed files with 69 additions and 1,729 deletions.
diff --git a/src/refinegems/data/database/data.db b/src/refinegems/data/database/data.db
diff --git a/src/refinegems/data/database/media_db.sql b/src/refinegems/data/database/media_db.sql
@@ -753,7 +753,7 @@ INSERT INTO "subset2substance" VALUES(4,328,1);
 INSERT INTO "subset2substance" VALUES(4,331,1);
 INSERT INTO "subset2substance" VALUES(4,330,1);
 INSERT INTO "subset2substance" VALUES(4,332,1);
-INSERT INTO "subset2substance" VALUES(4,333,1);
+INSERT INTO "subset2substance" VALUES(4,51,1);
 INSERT INTO "subset2substance" VALUES(4,334,1);
 INSERT INTO "subset2substance" VALUES(4,102,1);
 INSERT INTO "subset2substance" VALUES(4,17,1);
@@ -1096,7 +1096,6 @@ INSERT INTO "substance" VALUES(329,'Menaquinol-8','C51H74O2');
 INSERT INTO "substance" VALUES(330,'2-Demethylmenaquinol-8','C50H72O2');
 INSERT INTO "substance" VALUES(331,'2-Demethylmenaquinone-8','C50H70O2');
 INSERT INTO "substance" VALUES(332,'Acetyl-CoA','C23H38N7O17P3S');
-INSERT INTO "substance" VALUES(333,'Acetate','C2H3O2');
 INSERT INTO "substance" VALUES(334,'Coenzyme A','C21H36N7O16P3S');
 
 
@@ -1172,7 +1171,7 @@ INSERT INTO "substance2db" VALUES(47,'MNXM162711','MetaNetX');
 INSERT INTO "substance2db" VALUES(48,'adp','BiGG');
 INSERT INTO "substance2db" VALUES(49,'atp','BiGG');
 INSERT INTO "substance2db" VALUES(50,'acald','BiGG');
-INSERT INTO "substance2db" VALUES(51,'ac','BiGG');
+INSERT INTO "substance2db" VALUES(51,'ac','BiGG+VMH');
 INSERT INTO "substance2db" VALUES(52,'acac','BiGG');
 INSERT INTO "substance2db" VALUES(53,'acetone','BiGG');
 INSERT INTO "substance2db" VALUES(54,'ade','BiGG');
@@ -1725,3 +1724,70 @@ INSERT INTO "substance2db" VALUES(317,'MNXM1094127','MetaNetX');
 INSERT INTO "substance2db" VALUES(317,'MNXM1107906','MetaNetX');
 INSERT INTO "substance2db" VALUES(317,'MNXM1107908','MetaNetX');
 INSERT INTO "substance2db" VALUES(317,'cpd00532','SEED');
+INSERT INTO "substance2db" VALUES(318,'cpd00052','SEED');
+INSERT INTO "substance2db" VALUES(319,'cpd00062','SEED');
+INSERT INTO "substance2db" VALUES(320,'cpd00068','SEED');
+INSERT INTO "substance2db" VALUES(321,'cpd00090','SEED');
+INSERT INTO "substance2db" VALUES(322,'cpd00004','SEED');
+INSERT INTO "substance2db" VALUES(323,'cpd00005','SEED');
+INSERT INTO "substance2db" VALUES(324,'cpd00982','SEED');
+INSERT INTO "substance2db" VALUES(325,'cpd01270','SEED');
+INSERT INTO "substance2db" VALUES(326,'cpd15561','SEED');
+INSERT INTO "substance2db" VALUES(327,'cpd15560','SEED');
+INSERT INTO "substance2db" VALUES(328,'cpd15499','SEED');
+INSERT INTO "substance2db" VALUES(329,'cpd15500','SEED');
+INSERT INTO "substance2db" VALUES(330,'cpd15353','SEED');
+INSERT INTO "substance2db" VALUES(331,'cpd15352','SEED');
+INSERT INTO "substance2db" VALUES(332,'cpd00022','SEED');
+INSERT INTO "substance2db" VALUES(51,'cpd00029','SEED');
+INSERT INTO "substance2db" VALUES(334,'cpd00010','SEED');
+INSERT INTO "substance2db" VALUES(318,'MNXM1103718','MetaNetX');
+INSERT INTO "substance2db" VALUES(319,'MNXM1101474','MetaNetX');
+INSERT INTO "substance2db" VALUES(320,'MNXM1103428','MetaNetX');
+INSERT INTO "substance2db" VALUES(321,'MNXM1104559','MetaNetX');
+INSERT INTO "substance2db" VALUES(322,'MNXM10','MetaNetX');
+INSERT INTO "substance2db" VALUES(323,'MNXM738702','MetaNetX');
+INSERT INTO "substance2db" VALUES(324,'MNXM1105762','MetaNetX');
+INSERT INTO "substance2db" VALUES(325,'MNXM1107623','MetaNetX');
+INSERT INTO "substance2db" VALUES(326,'MNXM191','MetaNetX');
+INSERT INTO "substance2db" VALUES(327,'MNXM232','MetaNetX');
+INSERT INTO "substance2db" VALUES(328,'MNXM223','MetaNetX');
+INSERT INTO "substance2db" VALUES(329,'MNXM509','MetaNetX');
+INSERT INTO "substance2db" VALUES(330,'MNXM558','MetaNetX');
+INSERT INTO "substance2db" VALUES(331,'MNXM2178','MetaNetX');
+INSERT INTO "substance2db" VALUES(332,'MNXM1104266','MetaNetX');
+INSERT INTO "substance2db" VALUES(51,'MNXM26','MetaNetX');
+INSERT INTO "substance2db" VALUES(334,'MNXM727276','MetaNetX');
+INSERT INTO "substance2db" VALUES(318,'C00063','KEGG');
+INSERT INTO "substance2db" VALUES(319,'C00075','KEGG');
+INSERT INTO "substance2db" VALUES(320,'C00081','KEGG');
+INSERT INTO "substance2db" VALUES(321,'C00104','KEGG');
+INSERT INTO "substance2db" VALUES(322,'C00004','KEGG');
+INSERT INTO "substance2db" VALUES(323,'C00005','KEGG');
+INSERT INTO "substance2db" VALUES(324,'C01352','KEGG');
+INSERT INTO "substance2db" VALUES(325,'C01847','KEGG');
+INSERT INTO "substance2db" VALUES(326,'C00390','KEGG');
+INSERT INTO "substance2db" VALUES(327,'C17569','KEGG');
+INSERT INTO "substance2db" VALUES(328,'C05819','KEGG');
+INSERT INTO "substance2db" VALUES(329,'C00828','KEGG');
+INSERT INTO "substance2db" VALUES(330,'C19847','KEGG');
+INSERT INTO "substance2db" VALUES(331,'C05818','KEGG');
+INSERT INTO "substance2db" VALUES(332,'C00024','KEGG');
+INSERT INTO "substance2db" VALUES(51,'C00033','KEGG');
+INSERT INTO "substance2db" VALUES(334,'C00010','KEGG');
+INSERT INTO "substance2db" VALUES(318,'ctp','BiGG+VMH');
+INSERT INTO "substance2db" VALUES(319,'utp','BiGG+VMH');
+INSERT INTO "substance2db" VALUES(320,'itp','BiGG+VMH');
+INSERT INTO "substance2db" VALUES(321,'idp','BiGG+VMH');
+INSERT INTO "substance2db" VALUES(322,'nadh','BiGG+VMH');
+INSERT INTO "substance2db" VALUES(323,'nadph','BiGG+VMH');
+INSERT INTO "substance2db" VALUES(324,'fadh2','BiGG+VMH');
+INSERT INTO "substance2db" VALUES(325,'fmnh2','BiGG+VMH');
+INSERT INTO "substance2db" VALUES(326,'q8h2','BiGG+VMH');
+INSERT INTO "substance2db" VALUES(327,'q8','BiGG+VMH');
+INSERT INTO "substance2db" VALUES(328,'mql8','BiGG+VMH');
+INSERT INTO "substance2db" VALUES(329,'mqn8','BiGG+VMH');
+INSERT INTO "substance2db" VALUES(330,'2dmmql8','BiGG+VMH');
+INSERT INTO "substance2db" VALUES(331,'2dmmq8','BiGG+VMH');
+INSERT INTO "substance2db" VALUES(332,'accoa','BiGG+VMH');
+INSERT INTO "substance2db" VALUES(334,'coa','BiGG+VMH');