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| Gut Microbiota Medium (GMM) | ||
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^ | ||
| The Gut Microbiota Medium (GMM) is composed of all compounds described for the defined GMM in | ||
| 'Nutritional preferences of human gut bacteria reveal their metabolic idiosyncrasies'\ :footcite:p:`Tramontano2018`. | ||
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| .. list-table:: GMM composition | ||
| :align: center | ||
| :widths: 25 25 | ||
| :header-rows: 1 | ||
|
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| * - BiGG | ||
| - Substance | ||
|
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||
| * - glc__D | ||
| - D-Glucose | ||
| * - glc__b | ||
| - D-Glucose | ||
| * - fru | ||
| - Fructose | ||
| * - cellb | ||
| - Cellobiose | ||
| * - malt | ||
| - Maltose | ||
| * - | ||
| - Resazurin (KEGG: C11178) | ||
| * - hemeD | ||
| - Heme D [Hematin] | ||
| * - his__L | ||
| - L-Histidine | ||
| * - cys__L | ||
| - L-Cysteine | ||
| * - fe2 | ||
| - Fe2+ [FeSO4 . 7H2O] | ||
| * - so4 | ||
| - Sulfate [FeSO4 . 7H2O] | ||
| * - h2o | ||
| - H2O [FeSO4 . 7H2O] | ||
| * - zn2 | ||
| - Zinc [ZnSO4 * 7H2O] | ||
| * - cobalt2 | ||
| - Co2+ [Co(NO3)2 . 6H2O] | ||
| * - no3 | ||
| - Nitrate [Co(NO3)2 . 6H2O] | ||
| * - k | ||
| - Potassium [AlK(SO4)2 (anhydrous)] | ||
| * - na1 | ||
| - Sodium [NaCl] | ||
| * - cl | ||
| - Chloride [NaCl] | ||
| * - slnt | ||
| - Selenite [Na2SeO3 (anhydrous)] | ||
| * - tungs | ||
| - Tungstate [Na2WO4 . 2H2O] | ||
| * - ni2 | ||
| - Nickel [NiCl2 . 6H2O] | ||
| * - ca2 | ||
| - Calcium [CaCl2 (anhydrous)] | ||
| * - cu2 | ||
| - Copper [CuSO4 (anhydrous)] | ||
| * - | ||
| - H3BO3 | ||
| * - mn2 | ||
| - Manganese [MnSO4 * H2O] | ||
| * - mg2 | ||
| - Magnesium [MgSO4 * 7H2O] | ||
| * - hco3 | ||
| - Bicarbonate [NaHCO3] | ||
| * - mobd | ||
| - Molybdate [Na2MoO4 . 2H2O] | ||
| * - btn | ||
| - Biotin | ||
| * - thm | ||
| - Thiamin [Thiamine HCl] | ||
| * - ribflv | ||
| - Riboflavin | ||
| * - nac | ||
| - Nicotinate [Niacin] | ||
| * - nicnt | ||
| - Nicotinate [Niacin] | ||
| * - pydxn | ||
| - Pyridoxine [Pyridoxine HCl] | ||
| * - pnto__R | ||
| - (R)-Pantothenate [Calcium Pantothenate] | ||
| * - fol | ||
| - Folate [Folic acid] | ||
| * - 4abz | ||
| - 4-Aminobenzoate [p-Aminobenzoic acid] | ||
| * - lipoate | ||
| - Lipoate [Lipoic acid] | ||
| * - lipopb | ||
| - Lipoate (protein bound) [Lipoic acid] | ||
| * - b12 | ||
| - Vitamin B12 | ||
| * - cbl1 | ||
| - Cob(I)alamin [Vitamin B12] | ||
| * - cbl2 | ||
| - Cob(II)alamin [Vitamin B12] | ||
| * - mndn | ||
| - Menadione [Vitamin K (menadione)] | ||
| * - ac | ||
| - Acetate [Acetic acid] | ||
| * - M03134 | ||
| - Valeric acid [Isovaleric acid] | ||
| * - ival | ||
| - Isovalerate [Isovaleric acid] | ||
| * - ppa | ||
| - Propionate [Propionic acid] | ||
| * - but | ||
| - Butyrate [Butyric acid] | ||
| * - isobuta | ||
| - Isobutyric acid [Butyric acid] | ||
| * - ibt | ||
| - Isobutyrate [Butyric acid] | ||
| * - | ||
| - KH2PO4 | ||
| * - | ||
| - EDTA (KEGG: C00284) | ||
|
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||
| .. footbibliography:: |