Updated media_db.sql #16

draeger-lab · Feb 20, 2024 · d9844a9 · d9844a9
1 parent 9ed4b23
commit d9844a9
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Showing 2 changed files with 24 additions and 1,683 deletions.
diff --git a/src/refinegems/data/database/media_db.sql b/src/refinegems/data/database/media_db.sql
@@ -801,7 +801,7 @@ INSERT INTO "substance" VALUES(66,'Biotin','C10H15N2O3S');
 INSERT INTO "substance" VALUES(67,'Butyrate','C4H7O2');
 INSERT INTO "substance" VALUES(68,'Butyryl carnitine','C11H21NO4');
 INSERT INTO "substance" VALUES(69,'CAMP [Cyclic AMP]','C10H12N5O6P');
-INSERT INTO "substance" VALUES(70,'CDP','C9H15N3O11P2');
+INSERT INTO "substance" VALUES(70,'CDP [Cytidine diphosphate]','C9H15N3O11P2');
 INSERT INTO "substance" VALUES(71,'CMP','C9H14N3O8P');
 INSERT INTO "substance" VALUES(72,'Cadmium(II) cation [Cd2+]','Cd');
 INSERT INTO "substance" VALUES(73,'Calcidiol [25-Hydroxyvitamin D3]','C27H44O2');
@@ -858,8 +858,8 @@ INSERT INTO "substance" VALUES(123,'Dopamine 3-O-sulfate','C8H11NO5S');
 INSERT INTO "substance" VALUES(124,'Ergocalciferol [Vitamin D2]','C28H44O');
 INSERT INTO "substance" VALUES(125,'Estrone 3-sulfate','C18H21O5S');
 INSERT INTO "substance" VALUES(126,'Ethanol','C2H6O');
-INSERT INTO "substance" VALUES(127,'FMN [Flavin Mononucleotide]','C17H21N4O9P');
-INSERT INTO "substance" VALUES(128,'Flavin adenine dinucleotide oxidized [FAD]','C27H33N9O15P2');
+INSERT INTO "substance" VALUES(127,'FMN [oxidized Flavin mononucleotide]','C17H21N4O9P');
+INSERT INTO "substance" VALUES(128,'FAD [oxidized Flavin adenine dinucleotide]','C27H33N9O15P2');
 INSERT INTO "substance" VALUES(129,'Formaldehyde','CH2O');
 INSERT INTO "substance" VALUES(130,'Formate [Formic acid]','CHO2');
 INSERT INTO "substance" VALUES(131,'GDP [Guanosine diphosphate]','C10H15N5O11P2');
@@ -946,8 +946,8 @@ INSERT INTO "substance" VALUES(211,'N-(4-{[(2-amino-4-oxo-3,4-dihydropteridin-6-
 INSERT INTO "substance" VALUES(212,'N2-phenylacetyl-L-glutaminate','C13H15N2O4');
 INSERT INTO "substance" VALUES(213,'Niacinamide','C6H6N2O');
 INSERT INTO "substance" VALUES(214,'Nickel(II) cation [Ni(2+)]','Ni');
-INSERT INTO "substance" VALUES(215,'Nicotinamide adenine dinucleotide [NAD]','C21H27N7O14P2');
-INSERT INTO "substance" VALUES(216,'Nicotinamide adenine dinucleotide phosphate [NADP]','C21H28N7O17P3');
+INSERT INTO "substance" VALUES(215,'NAD [oxidized Nicotinamide adenine dinucleotide]','C21H27N7O14P2');
+INSERT INTO "substance" VALUES(216,'NADP [oxidized Nicotinamide adenine dinucleotide phosphate]','C21H28N7O17P3');
 INSERT INTO "substance" VALUES(217,'Nitrate [NO3(-)]','NO3');
 INSERT INTO "substance" VALUES(218,'Nitrite','NO2');
 INSERT INTO "substance" VALUES(219,'Nitrogen','N2');
@@ -1006,7 +1006,7 @@ INSERT INTO "substance" VALUES(272,'Thiosulfate','O3S2');
 INSERT INTO "substance" VALUES(273,'Thromboxane-b2 [Thromboxane B2]','C20H34O6');
 INSERT INTO "substance" VALUES(274,'Thymidine','C10H14N2O5');
 INSERT INTO "substance" VALUES(275,'Tungstate','O4W');
-INSERT INTO "substance" VALUES(276,'UDP [Uridine 5-diphosphate]','C9H14N2O12P2');
+INSERT INTO "substance" VALUES(276,'UDP [Uridine diphosphate]','C9H14N2O12P2');
 INSERT INTO "substance" VALUES(277,'UDPglucose [Uridine diphosphate glucose]','C15H24N2O17P2');
 INSERT INTO "substance" VALUES(278,'Ubiquinone-10','C59H90O4');
 INSERT INTO "substance" VALUES(279,'Uracil','C4H4N2O2');
@@ -1047,6 +1047,24 @@ INSERT INTO "substance" VALUES(314,'L-Selenomethionine','C5H11NO2Se');
 INSERT INTO "substance" VALUES(315,'gamma-Glutamyl-Se-methylselenocysteine','C9H16N2O5Se');
 INSERT INTO "substance" VALUES(316,'L-Adenosylselenohomocysteine','C14H20N6O5Se');
 INSERT INTO "substance" VALUES(317,'Superoxide [O2(-)]','O2');
+INSERT INTO "substance" VALUES(318,'CTP [Cytidine triphosphate]','C9H16N3O14P3');
+INSERT INTO "substance" VALUES(319,'UTP [Uridine triphosphate]','C9H15N2O15P3');
+INSERT INTO "substance" VALUES(320,'ITP [Inosine triphosphate]','C10H15N4O14P3');
+INSERT INTO "substance" VALUES(321,'IDP [Inosine diphosphate]','C10H14N4O11P2');
+INSERT INTO "substance" VALUES(322,'NADH [reduced Nicotinamide adenine dinucleotide]','C21H29N7O14P2');
+INSERT INTO "substance" VALUES(323,'NADPH [reduced Nicotinamide adenine dinucleotide phosphate]','C21H30N7O17P3');
+INSERT INTO "substance" VALUES(324,'FADH2 [reduced Flavin adenine dinucleotide]','C27H35N9O15P2');
+INSERT INTO "substance" VALUES(325,'FMNH2 [reduced Flavin mononucleotide]','C17H23N4O9P');
+INSERT INTO "substance" VALUES(326,'Ubiquinone-8','C49H74O4');
+INSERT INTO "substance" VALUES(327,'Ubiquinol-8','C49H76O4');
+INSERT INTO "substance" VALUES(328,'m
+Menaquinone-8','C51H72O2');
+INSERT INTO "substance" VALUES(329,'Menaquinol-8','C51H74O2');
+INSERT INTO "substance" VALUES(330,'2-Demethylmenaquinol-8','C50H72O2');
+INSERT INTO "substance" VALUES(331,'2-Demethylmenaquinone-8','C50H70O2');
+INSERT INTO "substance" VALUES(332,'Acetyl-CoA','C23H38N7O17P3S');
+INSERT INTO "substance" VALUES(333,'Acetate','C2H3O2');
+INSERT INTO "substance" VALUES(334,'Coenzyme A','C21H36N7O16P3S');
 
 
 CREATE TABLE IF NOT EXISTS substance2db (